gene_id gene_type chromosome position strand clusternumber search_method unique_on_genome ltag_abundance stag_abundance TAG TAG.Num DIFF.P Ratio COUNT_DabMu.COUNT_DabWT_1.COUNT_DabWT_2.TAG.per.100000 COUNT_PN1.TAG.per.100000 COUNT_DabMu.COUNT_DabWT_1.COUNT_DabWT_2.TAG.count COUNT_PN1.TAG.count cctttaatcc 1 1.37148229066501e-29 0.147239263803681 48 326 53 113 NM_011655 refGene chr17 35502124 - 58992 graph_last 171 1959 gcaggcactc 2 4.04476205903545e-26 3.86666666666667 580 150 642 52 tgggttgtct 3 1.82952823645248e-19 2.78354978354978 643 231 711 80 NM_009468 refGene chr18 43989922 - 64437 graph_last 0 158 tatgatggac 4 5.48167603922644e-18 0.0880503144654088 14 159 16 55 tgaccccggg 5 5.3380417655761e-17 6.675 267 40 295 14 cccttcttct 6 8.50103923298463e-16 19.3333333333333 174 9 192 3 NM_144513 refGene chr12 105137821 + 31142 graph_last l 111 313 agcttggcct 7 2.08498803773592e-14 0 0 78 0 27 tggatcagtc 8 3.40422294658795e-14 3.95061728395062 320 81 354 28 NM_144513 refGene chr12 105132566 + 31142 graph_last l 163 355 agagcaaatg 9 6.99816835946937e-14 0 0 75 0 26 NM_008220 refGene chr7 95961219 - 123777 graph_last 166 1031 tggatcctga 10 2.42354798322861e-12 9.8235294117647 167 17 185 6 NM_008538 refGene chr10 38260031 + 11621 graph_last l 7 148 aactcctaag 11 2.63463361273208e-12 0.115702479338843 14 121 15 42 tgtagtgtaa 12 5.71092527020336e-12 2.93700787401575 373 127 413 44 tagatatagg 13 1.32181236179345e-11 0.325 91 280 101 97 NM_009441 refGene chr16 96203958 + 56249 graph_last l 67 224 ttttgagtga 14 4.08276537849177e-11 0.0277777777777778 2 72 2 25 gtggctcaca 15 5.27812353004772e-11 0.58157602663707 524 901 580 312 agagcgaagt 16 1.60481640214447e-10 0.330769230769231 86 260 95 90 cgtctgtgga 17 1.60481640214447e-10 0.2 30 150 33 52 gcccccctct 18 1.684491825737e-10 0.0595238095238095 5 84 6 29 gcccgggaat 19 1.81405745110039e-10 3.53333333333333 265 75 293 26 NM_009115 refGene chr10 78400011 + 13741 graph_second 0 1628 gtgaccacgg 20 1.81405745110039e-10 19.6666666666667 118 6 130 2 NM_007589 refGene chr7 13970316 - 119114 graph_last l 222 685 atccgcaccc 21 6.32054876093303e-10 0.0888888888888889 8 90 9 31 ttgggccaga 22 9.58548278957932e-10 0.191176470588235 26 136 29 47 ggcttcggtc 23 2.64493951653861e-09 2.47058823529412 378 153 418 53 gtgaaactaa 24 4.73610077338027e-09 3.25641025641026 254 78 281 27 NM_144513 refGene chr12 105134045 + 31142 graph_last l 76 231 atcctaggtc 25 9.52964723780202e-09 0.0181818181818182 1 55 1 19 gtaagcaaaa 26 1.97144235885032e-08 5.73076923076923 149 26 165 9 gcctaatgta 27 2.98163237394738e-08 2.86315789473684 272 95 301 33 NM_010906 refGene chr8 85585530 - 131845 graph_last l 40 167 ggcaggactc 28 2.98163237394738e-08 0.0491803278688525 3 61 3 21 NM_008634 refGene chr13 97868504 - 37324 graph_last 77 416 cgcccgcccg 29 3.09153720917165e-08 0.133333333333333 12 90 13 31 NM_007393 refGene chr5 141627625 - 108227 graph_last 67 1238 gatacttgga 30 8.45036221436665e-08 0.418685121107266 121 289 134 100 gaatgatctg 31 6.48669826947109e-07 Inf 68 0 75 0 NM_024212 refGene chr9 66553115 + 138568 graph_second 0 828 tggtgacaaa 32 3.7227705806982e-06 4.3125 138 32 153 11 NM_172610 refGene chr15 85525718 + 48914 graph_last l 100 457 tcagacaata 33 4.29602816604873e-06 3.42857142857143 168 49 186 17 gccttccaat 34 4.93109707290316e-06 4.28125 137 32 151 11 ttcaaagagt 35 4.93109707290316e-06 0.098360655737705 6 61 7 21 agcagcccct 36 9.90499605545567e-06 0 0 35 0 12 AF063095 knownGene chr12 87316486 - 30295 graph_last 12 93 cagacctcaa 37 1.40880814206660e-05 0.0652173913043478 3 46 3 16 NM_022029 refGene chr9 38324022 - 136533 graph_last l 730 1545 cagctctgcc 38 1.61633395537617e-05 0.0961538461538462 5 52 5 18 tgaaataaac 39 2.44271543086777e-05 12.1666666666667 73 6 81 2 NM_134094 refGene chr15 38057343 + 46351 graph_last l 115 228 ccctgggagc 40 3.7502740605232e-05 0 0 32 0 11 NM_010025 refGene chrX 132123339 - 151844 graph_last l 3 70 agagaccaca 41 4.17739452392694e-05 0.109090909090909 6 55 7 19 tgcccagtgc 42 4.54547528771401e-05 0.0961538461538462 5 52 6 18 gaggctttgc 43 4.72655614167167e-05 0.102040816326531 5 49 5 17 aacaatttgg 44 4.90580332387826e-05 2.85245901639344 174 61 193 21 NM_016916 refGene chr2 158187789 + 80890 graph_last l 40 812 gggggagtgg 45 4.9827834195401e-05 0.430693069306931 87 202 96 70 ctgcctgccc 46 5.78157712816699e-05 0.360544217687075 53 147 59 51 ggcaagcccc 47 8.3504654225225e-05 2.734375 175 64 194 22 NM_009234 refGene chr12 21786977 + 26716 graph_last 1 196 gtgagtgttt 48 8.3504654225225e-05 6.75 81 12 90 4 NM_022029 refGene chr9 38323531 - 136533 graph_last l 147 488 ttaccatact 49 9.17618152084638e-05 0.127272727272727 7 55 8 19 gtctgctgat 50 0.000121162221042903 3.17391304347826 146 46 162 16 NM_022423 refGene chr11 58530943 - 20273 graph_last l 162 323 gctcagctta 51 0.000134773319793149 0.0930232558139535 4 43 4 15 ggaagccact 52 0.000158658106109743 3.02040816326531 148 49 164 17 NM_008683 refGene chr14 46790213 - 41409 graph_last l 42 362 tgtgcttccc 53 0.000249216242814402 10.5 63 6 70 2 gaagcaaaga 54 0.000303598379820370 18.3333333333333 55 3 61 1 NM_024477 refGene chr5 110283855 + 105898 graph_last 0 111 agcctgtcag 55 0.000325996259227912 18.6666666666667 56 3 62 1 attctccagt 56 0.000348599227995743 2.43589743589744 190 78 210 27 atggggttgg 57 0.000349985871883162 0.0571428571428571 2 35 2 12 NM_010925 refGene chr10 80555240 - 13897 graph_last l 9 108 acctgcatct 58 0.000385408331476796 0.0789473684210526 3 38 3 13 NM_008696 refGene chr1 40712852 - 1780 graph_last l 7 38 ctagaagcag 59 0.000385408331476796 0.0789473684210526 3 38 3 13 aagaggcaag 60 0.000509146839816915 4.21739130434783 97 23 107 8 NM_009721 refGene chr1 167488231 + 7965 graph_last l 226 760 ttctagcata 61 0.000509146839816915 0.212121212121212 14 66 16 23 NM_144513 refGene chr12 105142749 + 31142 graph_last l 151 372 gtgctttcaa 62 0.000646368334892465 5.64285714285714 79 14 87 5 gcctccaagg 63 0.000692264676203903 0.482926829268293 99 205 109 71 gtaagcataa 64 0.00070706846268187 2.24444444444444 202 90 223 31 Z36397 all_est chr15_random 6842715 - 50572 graph_last l 180 379 tggacaagct 65 0.000743533044589306 0.288888888888889 26 90 29 31 NM_023871 refGene chr2 30346412 - 73215 graph_last 18 64 attcaaatcc 66 0.000828274545471199 0.0344827586206897 1 29 1 10 NM_010838 refGene chr11 103995793 + 24313 graph_last l 32 165 atttctttgg 67 0.000828274545471199 0.336448598130841 36 107 40 37 cactgttgag 68 0.000828274545471199 0.227272727272727 15 66 17 23 NM_177188 refGene chr15_random 18413017 + 50810 graph_last 267 3986 gctgccctag 69 0.000938346446356216 0.751627906976744 808 1075 894 372 aagagtcttt 70 0.000977220809652527 0.0625 2 32 2 11 ccttgaaata 71 0.000977220809652527 0.0625 2 32 2 11 gaacattgca 72 0.000977220809652527 0.0625 2 32 2 11 NM_031404 refGene chr5 135974053 + 107867 graph_last l 15 82 gaacgcaagt 73 0.000977220809652527 0.0625 2 32 2 11 tctctctgtt 74 0.000977220809652527 0.0625 2 32 2 11 aagatcaaga 75 0.00129863735136936 0.388429752066116 47 121 52 42 NM_026859 refGene chr15 77986662 + 48143 graph_last l 54 191 cactgagtgt 76 0.00201783522070989 Inf 38 0 42 0 ctacgttctc 77 0.00201783522070989 15.6666666666667 47 3 52 1 gaaaatgaga 78 0.00201783522070989 Inf 38 0 42 0 NM_009536 refGene chr11 75336796 + 21637 graph_last l 188 733 gaattaacat 79 0.002061111430655 2.975 119 40 132 14 NM_011185 refGene chr17 15128563 - 57300 graph_last l 175 362 cgggtcatat 80 0.00206147677609162 16 48 3 53 1 ggatggggag 81 0.00221620024975367 4.2 84 20 93 7 NM_008634 refGene chr13 97881760 - 37324 graph_last 35 132 aaaccagagc 82 0.00256147407775389 0.0384615384615385 1 26 1 9 ccctgggttc 83 0.00307174724868723 0.417322834645669 53 127 59 44 AK003178 knownGene chr3 88749541 - 86498 graph_last 146 1157 ggggaaatcg 84 0.00310793815351730 0.576923076923077 165 286 183 99 NM_175692 refGene chr2 159011790 + 80939 graph_last l 664 956 ccttaccgct 85 0.00311159249563447 0.09375 3 32 3 11 aaaaaaaaaa 86 0.0031253976290057 0.647058823529412 275 425 304 147 gattccgtga 87 0.00317700776394482 2.10869565217391 194 92 215 32 aaaacagtgg 88 0.00342006201919461 0.438848920863309 61 139 68 48 NM_008065 refGene chr16 86134860 + 55647 graph_last 65 333 aattagttgt 89 0.00501518068797664 0.241379310344828 14 58 16 20 atacttgaca 90 0.00501518068797664 0 0 20 0 7 NM_024186 refGene chr13 89915066 + 36756 graph_last l 2 19 catccggtca 91 0.00501518068797664 0 0 20 0 7 CF585278 all_est chr12 33782179 + 27240 graph_last 7 36 gagaaactga 92 0.00501518068797664 0 0 20 0 7 NM_021477 refGene chr16 6894748 + 51276 graph_last l 15 66 ggtcttcctg 93 0.00501518068797664 0 0 20 0 7 tttattgact 94 0.00501518068797664 0 0 20 0 7 AK085367 knownGene chr8 119156583 + 133821 graph_last l 39 190 cttcggttgt 95 0.00553908896461745 0.131578947368421 5 38 6 13 tgaaaaaaaa 96 0.00561083370487729 5.25 63 12 70 4 Z36397 all_est chr15_random 6842828 + 50572 graph_last l 293 1449 tccgtggttg 97 0.00620580694040304 0.595667870036101 165 277 182 96 cagcatcacc 98 0.00643997432620688 3.09375 99 32 109 11 gatgacacca 99 0.0067572503169823 0.401869158878505 43 107 48 37 gcagccccta 100 0.00797520397269809 0.0434782608695652 1 23 1 8 tgtaacagga 101 0.00834374726167282 2.78947368421053 106 38 117 13 NM_019802 refGene chr6 73476551 - 113867 graph_last 4 80 aaacgaaagt 102 0.00843278110321373 0.103448275862069 3 29 3 10 NM_031179 refGene chr1 56302543 - 2445 graph_last l 29 113 caaactgaag 103 0.00843278110321373 0.0769230769230769 2 26 2 9 cacacacaca 104 0.00843278110321373 0.0769230769230769 2 26 2 9 NM_145602 refGene chr8 96998185 + 132612 graph_last l 379 925 ccgccccttt 105 0.00843278110321373 0.103448275862069 3 29 3 10 NM_013874 refGene chr7 23389583 + 119824 graph_last l 36 114 gcggagcccc 106 0.00843278110321373 0.0769230769230769 2 26 2 9 NM_025285 refGene chr3 8633892 + 82940 graph_last l 93 328 ggtgatgatg 107 0.00843278110321373 0.429752066115702 52 121 58 42 NM_010064 refGene chr2 71555694 + 75596 graph_last l 5 69 tcggacaaaa 108 0.00843278110321373 0.0769230769230769 2 26 2 9 NM_011181 refGene chr4_random 167174 - 99874 graph_last 23 135 ttggtaatct 109 0.00962985175203636 Inf 32 0 35 0 NM_023670 refGene chr6 49701833 - 112602 graph_last l 72 302 tggggaagag 110 0.0127535076958573 4.64285714285714 65 14 72 5 tgtactcaat 111 0.0127535076958573 1.88181818181818 207 110 229 38 NM_009192 refGene chr15 68300432 - 47664 graph_last 0 43 tatttattcc 112 0.0134825738486908 13.3333333333333 40 3 44 1 aaaaaattga 113 0.0135385890853958 0.142857142857143 5 35 6 12 tcttctcaca 114 0.0139215154046640 0.369047619047619 31 84 34 29 NM_013626 refGene chr1 99762346 + 4989 graph_second 0 80 cattggatac 115 0.0145565666025283 Inf 31 0 34 0 NM_019707 refGene chr8 121032700 + 133851 graph_last 11 59 acgaacatca 116 0.0162515919764582 0 0 17 0 6 CA316586 all_est chr6 30663632 + 111294 graph_last l 19 56 agaggagctg 117 0.0162515919764582 0 0 17 0 6 NM_010487 refGene chr9 22638223 - 135759 graph_last l 47 135 ccccacacac 118 0.0162515919764582 0.15625 5 32 5 11 gctgcctaga 119 0.0162515919764582 0 0 17 0 6 gttggaaaca 120 0.0162515919764582 0 0 17 0 6 AK045826 knownGene chr19 6623406 + 67692 graph_last l 75 119 tacaagtacc 121 0.0162515919764582 0 0 17 0 6 NM_008054 refGene chr10 40732120 + 11702 graph_last l 10 56 tgactctgaa 122 0.0162515919764582 0 0 17 0 6 NM_011655 refGene chr17 35502129 + 58992 graph_last l 16 135 tgccaggcac 123 0.0166609987671126 5.66666666666667 51 9 56 3 gcaataaatg 124 0.0179549176054832 2.38461538461538 124 52 137 18 gccgttctta 125 0.0183839406297575 12.6666666666667 38 3 42 1 gggaagtctg 126 0.0183839406297575 12.6666666666667 38 3 42 1 NM_026203 refGene chr10 21915572 + 10852 graph_last l 26 102 accctgctgt 127 0.0187754134148456 0.137931034482759 4 29 4 10 NM_173437 refGene chr1 138358972 - 6521 graph_last l 2 51 gcaaggctca 128 0.0187754134148456 0.137931034482759 4 29 4 10 NM_026892 refGene chr9 122879003 + 142179 graph_last l 94 428 tatgttgcgg 129 0.0187754134148456 3.65 73 20 81 7 NM_181548 refGene chrX 6480532 + 147056 graph_last l 175 1200 gcggggtcgc 130 0.0220796464181056 0.115384615384615 3 26 3 9 NM_009750 refGene chrX 124844890 + 151536 graph_last l 173 452 gaaagcaatg 131 0.0223763484419689 4.35714285714286 61 14 68 5 NM_007883 refGene chr18 20972896 + 63182 graph_last 140 717 aattcgcgga 132 0.0225121518827941 0.05 1 20 1 7 ggcagccccc 133 0.0225121518827941 0.05 1 20 1 7 AK010485 knownGene chr15_random 13961085 + 50719 graph_last 1 27 aattctctgt 134 0.0228566087222895 0.0869565217391304 2 23 2 8 NM_010267 refGene chr1 17332941 + 648 graph_last l 33 76 cagagtgtct 135 0.0228566087222895 0.0869565217391304 2 23 2 8 gccttggtga 136 0.0228566087222895 0.0869565217391304 2 23 2 8 NM_018799 refGene chr4 128521019 + 97495 graph_last l 28 66 tctatctcag 137 0.0228566087222895 0.0869565217391304 2 23 2 8 NM_009668 refGene chr18 32621656 + 63661 graph_last l 84 207 ttcagggcgg 138 0.0228566087222895 0.0869565217391304 2 23 2 8 NM_011889 refGene chr15 83848784 + 48775 graph_last 10 98 gtgtacatac 139 0.0234117892568653 0.171428571428571 6 35 7 12 tttttgatga 140 0.0237719528376162 0.290909090909091 16 55 18 19 NM_007467 refGene chr7 24336416 - 119935 graph_last l 177 495 gctatgagaa 141 0.023883483623821 0.310344827586207 18 58 20 20 aaatcctttc 142 0.0294905249210144 0.34375 22 64 24 22 atgtctcaaa 143 0.0294905249210144 1.6242774566474 281 173 311 60 gagcgttttg 144 0.0294905249210144 0.585365853658537 120 205 133 71 tcttaatgaa 145 0.0298498626647695 2.62857142857143 92 35 102 12 NM_144915 refGene chr5 142286412 + 108317 graph_last l 263 516 tatgaattaa 146 0.0315870947426212 5.33333333333333 48 9 53 3 attgtttatg 147 0.0323364393270745 3.03846153846154 79 26 87 9 NM_029761 refGene chr2_random 1107769 - 82579 graph_last 11 66 gacaataaaa 148 0.037414361519002 11.3333333333333 34 3 38 1 AK084468 all_mrna chr5_random 7786726 - 109151 graph_last 0 188 gcactgttaa 149 0.0405526844990002 4.07142857142857 57 14 63 5 taagtggaat 150 0.0405526844990002 4.07142857142857 57 14 63 5 NM_007697 refGene chr6 105400770 + 115725 graph_last l 14 175 gagttcagct 151 0.0440018900432301 3.35 67 20 74 7 NM_010882 refGene chr7 54865856 + 121556 graph_last l 79 569 tatgcaaccc 152 0.0450266667456254 3 78 26 86 9 agaaataaat 153 0.0454406732965953 Inf 26 0 29 0 caaaaaaaaa 154 0.0454406732965953 Inf 26 0 29 0 gaagtcggaa 155 0.0454406732965953 Inf 26 0 29 0 aaaagaggaa 156 0.0460808482911512 0 0 14 0 5 aataaactgc 157 0.0460808482911512 5.22222222222222 47 9 52 3 NM_011857 refGene chr8 48179124 - 129903 graph_last 2 24 acccctctgt 158 0.0460808482911512 0 0 14 0 5 NM_018815 refGene chr6 92559047 + 114978 graph_last 0 8 agaaggaggg 159 0.0460808482911512 0 0 14 0 5 NM_031874 refGene chr9 22514478 - 135726 graph_last 0 11 aggtagaaga 160 0.0460808482911512 0 0 14 0 5 atgtgtgcaa 161 0.0460808482911512 0 0 14 0 5 BC021509 knownGene chr5 129833260 - 107354 graph_last 1 33 attacagcca 162 0.0460808482911512 0 0 14 0 5 cacagctctg 163 0.0460808482911512 0 0 14 0 5 ccaagggtcc 164 0.0460808482911512 0 0 14 0 5 NM_010828 refGene chr10 18446012 + 10611 graph_last s 1 20 cccgcctcgg 165 0.0460808482911512 0 0 14 0 5 ccttctgcct 166 0.0460808482911512 0 0 14 0 5 NM_018858 refGene chr5 116315654 + 106380 graph_last l 120 447 ctcttccccc 167 0.0460808482911512 0.360655737704918 22 61 24 21 ctgcagcggc 168 0.0460808482911512 0 0 14 0 5 gaaactaggt 169 0.0460808482911512 0.153846153846154 4 26 4 9 NM_008060 refGene chr19 9056013 + 67898 graph_last l 3 11 gcagtgtact 170 0.0460808482911512 0 0 14 0 5 ggggttttat 171 0.0460808482911512 0 0 14 0 5 NM_026222 refGene chr3 34770123 + 84139 graph_last 1 26 gtgattttcc 172 0.0460808482911512 0 0 14 0 5 NM_021881 refGene chr17 9967167 - 56956 graph_last l 4 22 taatgaaatt 173 0.0460808482911512 0 0 14 0 5 genomic chr10 95618767 + 0 unique_long l 44 105 tattaatatt 174 0.0460808482911512 0.153846153846154 4 26 4 9 NM_009389 refGene chr9 63768355 + 138375 graph_last b 8 40 tcgtcgtgcc 175 0.0460808482911512 0.153846153846154 4 26 4 9 NM_007906 refGene chr2 180995866 - 82448 graph_last l 124 486 tctgcacctc 176 0.0460808482911512 0 0 14 0 5 NM_133791 refGene chr8 47689575 - 129872 graph_last l 3 19 tgcccggtgt 177 0.0460808482911512 0 0 14 0 5 NM_145465 refGene chr14 114360138 + 44472 graph_last l 5 24 tgggaacctt 178 0.0460808482911512 0 0 14 0 5 tgggacgcca 179 0.0460808482911512 0 0 14 0 5 BF472943 all_est chr1 38108441 - 1588 graph_last l 30 61 tgtgaggctc 180 0.0460808482911512 0 0 14 0 5 tgtgtttgtg 181 0.0460808482911512 0 0 14 0 5 ggatttggct 182 0.0469766958866696 1.70866141732283 217 127 240 44 NM_013685 refGene chr18 70042134 + 65838 graph_last l 12 177 accgttctgt 183 0.0481114525828324 4 56 14 62 5 NM_009234 refGene chr12 21786108 + 26716 graph_last 1 74 cagagtgtag 184 0.0487067338571414 11 33 3 37 1 gaggagaaga 185 0.048852651065835 2.75862068965517 80 29 89 10 NM_023122 refGene chrX 154409033 + 152747 graph_last l 28 172 gttggctcct 186 0.0491878246245602 0.130434782608696 3 23 3 8 NM_010838 refGene chr11 103992080 + 24313 graph_last l 123 477 gagagaagag 187 0.0518115337156661 0.532374100719424 74 139 82 48 NM_023603 refGene chr4 125949966 - 97273 graph_last l 40 132 ttgtgtgctg 188 0.0533577437410509 0.275 11 40 12 14 NM_053071 refGene chr15 36415651 - 46234 graph_last l 399 1119 aatatgtgtg 189 0.0543120375589453 0.516949152542373 61 118 67 41 NM_013540 refGene chr3 82528196 - 86190 graph_last l 7 21 acactttctt 190 0.0543120375589453 0.0588235294117647 1 17 1 6 NM_146243 refGene chr11 19961775 + 18008 graph_last 22 71 cacacagact 191 0.0543120375589453 0.1 2 20 2 7 genomic chr2 131320194 - 0 unique_long l 14 62 ccatcagtgg 192 0.0543120375589453 0.0588235294117647 1 17 1 6 NM_007828 refGene chr10 83563948 + 14173 graph_last b 8 51 ccgcgcaaca 193 0.0543120375589453 0.0588235294117647 1 17 1 6 ctagtgttga 194 0.0543120375589453 0.1 2 20 2 7 NM_009440 refGene chrX 93368218 - 150509 graph_last l 22 55 ctatgtgttg 195 0.0543120375589453 0.1 2 20 2 7 NM_008512 refGene chr10 130814379 - 16708 graph_last l 32 102 ctcagtatcc 196 0.0543120375589453 0.1 2 20 2 7 NM_008745 refGene chr13 58919793 + 35397 graph_last l 24 60 ctgaagcccg 197 0.0543120375589453 0.0588235294117647 1 17 1 6 NM_029570 refGene chr3 36808028 + 84223 graph_last l 7 37 cttcaacctg 198 0.0543120375589453 0.1 2 20 2 7 ggaaggatag 199 0.0543120375589453 0.0588235294117647 1 17 1 6 AF172088 knownGene chr7 110055240 - 124600 graph_last l 23 121 ggatcattct 200 0.0543120375589453 0.1 2 20 2 7 AK052734 knownGene chr11 72496802 + 21327 graph_last l 10 30 gtgatcagca 201 0.0543120375589453 0.0588235294117647 1 17 1 6 NM_009320 refGene chr6 93295433 + 115017 graph_last l 16 47 tattttgtgg 202 0.0543120375589453 0.1 2 20 2 7 genomic chr9 69502315 - 0 unique_long l 14 46 tccagaaaat 203 0.0543120375589453 0.0588235294117647 1 17 1 6 NM_013876 refGene chr4 108313676 - 96057 graph_last l 24 76 tttaaattgt 204 0.0543120375589453 0.0588235294117647 1 17 1 6 NM_007636 refGene chr10 120033751 - 16078 graph_last l 83 199 ggtctaattt 205 0.0543279404188394 Inf 24 0 27 0 gtggcttaca 206 0.0543279404188394 Inf 24 0 27 0 NM_010064 refGene chr2 71604471 + 75596 graph_last l 68 260 ttgatgccat 207 0.0571756912518932 4.16666666666667 50 12 55 4 NM_009308 refGene chr18 31774468 + 63593 graph_last l 12 50 gaacctgtgg 208 0.0574039101403028 0.172413793103448 5 29 6 10 NM_019431 refGene chr11 107397888 - 24662 graph_second l 9 66 tggcctttga 209 0.0574039101403028 0.172413793103448 5 29 6 10 atagaggcaa 210 0.0589775674459967 6.33333333333333 38 6 42 2 genomic chr9 22636872 - 0 unique_long l 9 119 acagtctatg 211 0.0604509185100306 0.345454545454545 19 55 21 19 cctgatcttt 212 0.0604509185100306 0.473684210526316 45 95 50 33 ccagtcctgg 213 0.0607451196137324 0.375 24 64 27 22 tagggcaatc 214 0.0624002769330172 3.15 63 20 70 7 acagtgcctg 215 0.0636686535543393 10.6666666666667 32 3 35 1 BC052699 knownGene chr6 126842831 - 116923 graph_last l 137 519 aacccctgcc 216 0.0670795765719552 0.432098765432099 35 81 39 28 NM_010315 refGene chr14 14746520 - 39376 graph_last l 59 298 aacggtgtat 217 0.0729020835761847 2.30232558139535 99 43 110 15 agactatgca 218 0.0729020835761847 0.192307692307692 5 26 5 9 ccaacactga 219 0.0729020835761847 0.192307692307692 5 26 5 9 NM_144513 refGene chr12 105139339 + 31142 graph_last l 161 243 ctaagtaaaa 220 0.0729020835761847 0.192307692307692 5 26 5 9 NM_021539 refGene chr5 116409924 + 106398 graph_last l 42 141 ggatgtaccc 221 0.0729020835761847 0.192307692307692 5 26 5 9 NM_008302 refGene chr17 44965211 - 59486 graph_last 291 729 gtgagcccat 222 0.0729020835761847 0.192307692307692 5 26 5 9 NM_009238 refGene chr13 28839679 - 33570 graph_last l 6 39 tccctgggca 223 0.0729020835761847 0.192307692307692 5 26 5 9 NM_134022 refGene chr11 70603244 - 21213 graph_last l 82 441 tctgatggaa 224 0.0776253470028826 2.16326530612245 106 49 117 17 acccgccggg 225 0.0786973292934853 Inf 23 0 25 0 NM_008748 refGene chr7 134136739 - 126141 graph_last l 3 117 agacggatgt 226 0.0786973292934853 Inf 23 0 25 0 gagacagtga 227 0.0786973292934853 Inf 23 0 25 0 ggcctgaggc 228 0.0786973292934853 Inf 23 0 25 0 tcaaacttgg 229 0.0790990093841998 1.94202898550725 134 69 148 24 NM_025628 refGene chr7 24582313 - 119954 graph_last 226 1081 atgcaactac 230 0.0810580896771894 2.07272727272727 114 55 126 19 NM_008211 refGene chr11 115528094 - 25152 graph_last l 34 207 ggagtaagaa 231 0.0812378234277003 3.35294117647059 57 17 63 6 ggtcagtcgg 232 0.082716473755006 Inf 24 0 26 0 tacaacactc 233 0.0860316915238892 0.257142857142857 9 35 10 12 NM_153112 refGene chr7_random 1489652 - 126499 graph_last 117 251 tttgcacggt 234 0.0860316915238892 0.257142857142857 9 35 10 12 gtaaaaaaaa 235 0.0872110145365373 2.42857142857143 85 35 94 12 aatttcccct 236 0.0887072627690562 0.325581395348837 14 43 15 15 NM_009409 refGene chr14 11705194 + 39241 graph_last l 58 166 attgcagact 237 0.0887072627690562 10 30 3 33 1 acacagaaac 238 0.0897510380775086 0.173913043478261 4 23 4 8 NM_019498 refGene chr2 28499439 + 73055 graph_last l 50 160 caatgctgta 239 0.0897510380775086 0.173913043478261 4 23 4 8 NM_026769 refGene chr7 131959952 - 125952 graph_last l 32 121 cacactgcct 240 0.0897510380775086 0.173913043478261 4 23 4 8 NM_009696 refGene chr7 16662924 - 119339 graph_last l 338 1356 catcgccagt 241 0.0897510380775086 0.173913043478261 4 23 4 8 NM_010151 refGene chr13 76260992 - 36347 graph_last l 16 69 tccatccagt 242 0.0897510380775086 0.173913043478261 4 23 4 8 NM_016698 refGene chr5 114291683 - 106212 graph_last l 30 80 aaattggaca 243 0.0928581502378975 0.206896551724138 6 29 7 10 NM_008634 refGene chr13 97870964 + 37324 graph_last 20 91 acttcaatat 244 0.0928581502378975 0.206896551724138 6 29 7 10 NM_008946 refGene chr11 70098721 + 21147 graph_last b 35 205 gaacgcgacg 245 0.0928581502378975 0.206896551724138 6 29 7 10 gccgcagtgg 246 0.0928581502378975 0.206896551724138 6 29 7 10 taagggaaat 247 0.0928581502378975 4.55555555555556 41 9 45 3 NM_019410 refGene chr3 59231425 - 85210 graph_last l 161 357 aagcgtgcag 248 0.093475930891782 0.3 12 40 13 14 tctaccccat 249 0.093475930891782 0.3 12 40 13 14 NM_013725 refGene chr7 38100510 - 120754 graph_last 141 373 tctgtgcacc 250 0.098308275885944 0.390625 25 64 28 22 ctaataaagc 251 0.100011380805536 1.72277227722772 174 101 192 35 aaaaataaaa 252 0.106885499221241 Inf 21 0 23 0 genomic chr11 68662887 - 0 unique_long l 4 14 aaaactgggg 253 0.106885499221241 0 0 12 0 4 NM_025808 refGene chr16 17130765 + 51924 graph_last l 20 55 aaacggtaag 254 0.106885499221241 0 0 12 0 4 aaattccttt 255 0.106885499221241 0 0 12 0 4 aacaggttca 256 0.106885499221241 2.275 91 40 101 14 aaccgcgaat 257 0.106885499221241 0 0 12 0 4 aacgcgtgtg 258 0.106885499221241 0 0 12 0 4 aagagaaacc 259 0.106885499221241 0.117647058823529 2 17 2 6 NM_194462 refGene chr5 3973741 + 100160 graph_last 0 11 aagccgagat 260 0.106885499221241 0 0 12 0 4 NM_025848 refGene chr9 52633577 - 137561 graph_last l 30 85 aagctcgaaa 261 0.106885499221241 0.117647058823529 2 17 2 6 genomic chr9 44684175 - 0 unique_long l 7 35 aaggagagtt 262 0.106885499221241 0 0 12 0 4 NM_134086 refGene chr15 98545598 + 49712 graph_last l 12 40 aaggatatct 263 0.106885499221241 0 0 12 0 4 NM_013854 refGene chr17 35652435 - 59005 graph_last l 9 26 aaggtggcgt 264 0.106885499221241 0 0 12 0 4 NM_053207 refGene chr8 126716435 - 134382 graph_second 6 13 aagtacagcc 265 0.106885499221241 0 0 12 0 4 NM_177298 refGene chr5 31109648 - 101730 graph_last l 15 38 aatttctcct 266 0.106885499221241 0 0 12 0 4 AB016490 knownGene chr3 92649260 + 86894 graph_last l 23 53 acacagactt 267 0.106885499221241 0 0 12 0 4 acagtgggga 268 0.106885499221241 Inf 22 0 24 0 AK007352 knownGene chr4 137234621 + 98340 graph_second l 344 642 accgacaagg 269 0.106885499221241 0 0 12 0 4 NM_007697 refGene chr6 105396974 + 115725 graph_last l 6 33 agaacaacac 270 0.106885499221241 0 0 12 0 4 NM_025804 refGene chr8 125253642 + 134250 graph_last 2 24 aggggcctag 271 0.106885499221241 0 0 12 0 4 NM_029850 refGene chr5 122246815 - 106834 graph_last l 2 12 aggtatttaa 272 0.106885499221241 0 0 12 0 4 ataggcaaaa 273 0.106885499221241 0 0 12 0 4 NM_022410 refGene chr15 79105966 + 48274 graph_last l 8 30 atttgactgg 274 0.106885499221241 0 0 12 0 4 attttcatca 275 0.106885499221241 0 0 12 0 4 caaggtgaca 276 0.106885499221241 0.590277777777778 85 144 94 50 NM_025382 refGene chr4 133683735 - 98024 graph_last l 3 24 cactgcttcc 277 0.106885499221241 0 0 12 0 4 NM_019978 refGene chr3 56887987 + 85071 graph_last l 4 11 ccaagttggc 278 0.106885499221241 0 0 12 0 4 BY238464 all_est chr2 118967939 + 78313 graph_last l 9 29 ccgagcgagg 279 0.106885499221241 0 0 12 0 4 NM_025482 refGene chr2 181400858 + 82485 graph_last l 34 183 cctctgtttg 280 0.106885499221241 0.346938775510204 17 49 19 17 NM_057171 refGene chr17 34807771 + 58931 graph_last l 21 121 cctgccaaga 281 0.106885499221241 0.25 8 32 9 11 cgcaacttgg 282 0.106885499221241 0 0 12 0 4 cgctggttcc 283 0.106885499221241 2.20930232558140 95 43 105 15 NM_023465 refGene chr4 147658869 + 99296 graph_last l 13 28 ctgaggaaga 284 0.106885499221241 0 0 12 0 4 gaaaatatcc 285 0.106885499221241 5.66666666666667 34 6 38 2 genomic chr8 125233281 + 0 unique_long l 41 105 gaaacgcaga 286 0.106885499221241 0 0 12 0 4 NM_012014 refGene chr13 54519110 - 35074 graph_last l 11 43 gaaaggtcag 287 0.106885499221241 0.117647058823529 2 17 2 6 NM_010311 refGene chr10 77157835 + 13630 graph_last l 10 32 gaactccccg 288 0.106885499221241 0 0 12 0 4 NM_144879 refGene chr1 194682531 + 9611 graph_last 2 25 gaactgtaat 289 0.106885499221241 Inf 21 0 23 0 NM_008989 refGene chr18 36470200 + 63957 graph_last l 10 43 gatctcaagg 290 0.106885499221241 0 0 12 0 4 genomic chr5 134694843 + 0 unique_long l 5 12 gcaagaatag 291 0.106885499221241 0 0 12 0 4 NM_172903 refGene chr7 72777515 - 122423 graph_last 0 64 gcaagtttga 292 0.106885499221241 0 0 12 0 4 genomic chr13 81769209 - 0 unique_long l 7 14 gcttagggta 293 0.106885499221241 0 0 12 0 4 gcttccaatc 294 0.106885499221241 0 0 12 0 4 gcttgcccta 295 0.106885499221241 0 0 12 0 4 gcttttgtta 296 0.106885499221241 0.192307692307692 5 26 6 9 ggcaaaaagc 297 0.106885499221241 0 0 12 0 4 NM_153803 refGene chr9 27407141 + 135957 graph_last l 52 167 ggcaaaggct 298 0.106885499221241 5.66666666666667 34 6 38 2 BB871295 all_est chr14 56138477 + 42105 graph_last l 27 119 ggcagactgt 299 0.106885499221241 9.33333333333333 28 3 31 1 gggaaactaa 300 0.106885499221241 0 0 12 0 4 ggtggctcac 301 0.106885499221241 0 0 12 0 4 NM_010630 refGene chr15 78198019 + 48169 graph_last l 55 159 gtgacagagg 302 0.106885499221241 0.117647058823529 2 17 2 6 gtgactttgc 303 0.106885499221241 Inf 21 0 23 0 gtgagcttgt 304 0.106885499221241 Inf 21 0 23 0 NM_029031 refGene chr11 72747651 - 21365 graph_last l 8 32 gtgcacgtct 305 0.106885499221241 0 0 12 0 4 NM_139272 refGene chr8 126141377 + 134336 graph_last 3 36 gtggccagtg 306 0.106885499221241 0 0 12 0 4 gtggtgcaca 307 0.106885499221241 0.117647058823529 2 17 2 6 AI838513 all_est chr1 137208174 - 6402 graph_last l 8 29 gtgtggccct 308 0.106885499221241 0 0 12 0 4 NM_023048 refGene chr6 5155867 - 110069 graph_last 0 84 gttaaaaaaa 309 0.106885499221241 Inf 21 0 23 0 NM_009305 refGene chrX 6213381 + 147019 graph_last l 175 478 gttgggagct 310 0.106885499221241 0.117647058823529 2 17 2 6 NM_009303 refGene chr15 81497528 + 48510 graph_last l 53 134 taagcaagag 311 0.106885499221241 0 0 12 0 4 NM_011130 refGene chr8 21492512 - 128541 graph_last 2 9 tatgaatgtg 312 0.106885499221241 0 0 12 0 4 NM_172661 refGene chr2 32506465 + 73413 graph_last l 14 50 tcacaatcct 313 0.106885499221241 0 0 12 0 4 NM_144892 refGene chr2 165613083 + 81339 graph_last l 78 141 tccatccagg 314 0.106885499221241 0 0 12 0 4 NM_028207 refGene chr11 101637639 - 24017 graph_second 0 9 tccgtgggtg 315 0.106885499221241 0 0 12 0 4 NM_011352 refGene chr9 60247794 + 138104 graph_last l 7 42 tcctaactta 316 0.106885499221241 0.117647058823529 2 17 2 6 tcctcacggg 317 0.106885499221241 Inf 22 0 24 0 NM_012010 refGene chrX 83950642 + 149980 graph_last 1 7 tgaaagtggt 318 0.106885499221241 0 0 12 0 4 NM_016843 refGene chr15 87130916 + 49033 graph_last l 13 32 tgaacggggc 319 0.106885499221241 0.117647058823529 2 17 2 6 BY534359 all_est chrX 84532804 + 150025 graph_last 0 72 tgagagaaaa 320 0.106885499221241 Inf 21 0 23 0 NM_173419 refGene chr14 53435335 - 41872 graph_last l 6 13 tgattttgag 321 0.106885499221241 0 0 12 0 4 NM_026095 refGene chr10 77678746 + 13664 graph_last l 36 132 tgcatatgtc 322 0.106885499221241 9.66666666666667 29 3 32 1 NM_173364 refGene chr9 125235525 - 142346 graph_last l 10 39 tgccagtgac 323 0.106885499221241 0 0 12 0 4 tggatcaagt 324 0.106885499221241 0 0 12 0 4 NM_016787 refGene chr9 72480244 + 139083 graph_last l 27 89 tggttacgta 325 0.106885499221241 Inf 22 0 24 0 NM_011026 refGene chr5 121977418 + 106813 graph_second 2 10 tgtgtaatcc 326 0.106885499221241 0 0 12 0 4 ttcagctcga 327 0.106885499221241 0.489130434782609 45 92 50 32 NM_146005 refGene chr10 73135380 + 13402 graph_last 36 79 ttcttcagac 328 0.106885499221241 0 0 12 0 4 ttcttgactt 329 0.106885499221241 9.33333333333333 28 3 31 1 genomic chr18 70041110 - 0 unique_long l 9 33 ttgtgcttgt 330 0.106885499221241 0 0 12 0 4 NM_172449 refGene chr11 87346169 + 22822 graph_last l 39 56 ttttcttcgc 331 0.106885499221241 0 0 12 0 4 NM_008228 refGene chr4 128429122 + 97479 graph_last l 21 193 tctctgactt 332 0.107284087701491 0.39344262295082 24 61 27 21 atccgaaaga 333 0.113901144436181 0.524752475247525 53 101 59 35 aatgagacaa 334 0.113914003583094 0.0714285714285714 1 14 1 5 aggaaatgag 335 0.113914003583094 0.0714285714285714 1 14 1 5 NM_177614 refGene chr10 130368387 - 16662 graph_last l 11 55 agggtgagga 336 0.113914003583094 0.0714285714285714 1 14 1 5 NM_025282 refGene chr13 81768319 + 36483 graph_last l 3 17 atcacattat 337 0.113914003583094 0.0714285714285714 1 14 1 5 atctgacgcc 338 0.113914003583094 0.0714285714285714 1 14 1 5 cagaggaagg 339 0.113914003583094 0.0714285714285714 1 14 1 5 ccaagaatct 340 0.113914003583094 0.0714285714285714 1 14 1 5 ccctgacttc 341 0.113914003583094 0.0714285714285714 1 14 1 5 genomic chr7 93057142 + 0 unique_long l 31 142 ccgggctggc 342 0.113914003583094 0.0714285714285714 1 14 1 5 NM_198886 refGene chr17 34557187 + 58892 graph_last 1 33 cctcaaagag 343 0.113914003583094 0.0714285714285714 1 14 1 5 NM_019827 refGene chr16 38048116 + 53446 graph_last l 18 74 ctcggattca 344 0.113914003583094 0.0714285714285714 1 14 1 5 NM_146072 refGene chr16 89234221 - 55766 graph_last 2 10 gatagaggga 345 0.113914003583094 0.0714285714285714 1 14 1 5 NM_009980 refGene chr7 124868336 - 125551 graph_last l 7 35 gctctaccag 346 0.113914003583094 0.0714285714285714 1 14 1 5 NM_153791 refGene chr17 23346778 - 57732 graph_last l 66 283 gtgatgcgga 347 0.113914003583094 0.0714285714285714 1 14 1 5 NM_126165 refGene chr8 108577067 + 133146 graph_last l 42 86 taggacactt 348 0.113914003583094 0.0714285714285714 1 14 1 5 tcaactttca 349 0.113914003583094 0.0714285714285714 1 14 1 5 NM_027324 refGene chr13 53858187 + 35020 graph_last l 16 48 tctgtgacaa 350 0.113914003583094 0.0714285714285714 1 14 1 5 NM_016703 refGene chr5 29292420 - 101545 graph_last l 15 40 tgaagatgcc 351 0.113914003583094 0.0714285714285714 1 14 1 5 genomic chr6 42782014 - 0 unique_long l 17 52 ttgaaagtgc 352 0.113914003583094 0.0714285714285714 1 14 1 5 NM_175229 refGene chr17 23399125 + 57745 graph_last l 32 111 ttgctggaaa 353 0.113914003583094 0.0714285714285714 1 14 1 5 NM_008258 refGene chr11 115003044 - 25097 graph_last 24 285 gagaaagtct 354 0.114090501496092 2.40625 77 32 85 11 NM_017367 refGene chr5 94551679 - 104851 graph_last 131 360 tactgctgat 355 0.119717657564394 5.5 33 6 36 2 tatgtcacct 356 0.119717657564394 0.35 14 40 15 14 NM_053104 refGene chr15 78424273 - 48203 graph_last l 22 121 ttgctggctt 357 0.119717657564394 5.5 33 6 36 2 aaaataaagg 358 0.120084532971485 5.5 33 6 37 2 ctagtctttg 359 0.120084532971485 1.39299610894942 358 257 396 89 gactatatat 360 0.120084532971485 5.5 33 6 37 2 gctataataa 361 0.120084532971485 5.5 33 6 37 2 cctttagtcc 362 0.122911501824279 0.217391304347826 5 23 5 8 gcgaagctca 363 0.122911501824279 0.554545454545455 61 110 67 38 gttgctgttt 364 0.122911501824279 0.217391304347826 5 23 5 8 NM_009030 refGene chr4 128222925 - 97446 graph_last 68 191 actaactgtg 365 0.128433079398211 Inf 20 0 22 0 genomic chr7 124857190 + 0 unique_long l 14 81 aggagatgga 366 0.128433079398211 Inf 20 0 22 0 BC059845 all_mrna chr4_random 163545 + 99872 graph_last 59 175 agggccactg 367 0.128433079398211 0.384615384615385 20 52 22 18 atgtcatcaa 368 0.128433079398211 0.28125 9 32 10 11 NM_007421 refGene chr12 108213627 - 31438 graph_last 2 76 taaaattgtt 369 0.128433079398211 Inf 20 0 22 0 NM_021604 refGene chr4 154278673 - 99853 graph_last l 40 149 aaataaagtc 370 0.132511471421837 4.22222222222222 38 9 42 3 NM_025285 refGene chr3 8633132 + 82940 graph_last l 50 284 gtttaaaaag 371 0.132511471421837 2.25714285714286 79 35 87 12 tgtatttata 372 0.134428345603263 8.66666666666667 26 3 29 1 atcctggtaa 373 0.147365219266852 0.403846153846154 21 52 23 18 cgggagatgc 374 0.153173120736452 2.06521739130435 95 46 105 16 AK080973 knownGene chr4 74397681 - 94336 graph_last l 26 94 gagtctcttc 375 0.154103427192711 0.230769230769231 6 26 7 9 tgggttgtgg 376 0.154103427192711 0.230769230769231 6 26 7 9 aacttcttgt 377 0.162167179602275 0.2 4 20 4 7 NM_130863 refGene chr19_random 15495020 - 71388 graph_last l 31 106 accccttgtg 378 0.162167179602275 0.2 4 20 4 7 aggccaagaa 379 0.162167179602275 0.2 4 20 4 7 CA316586 all_est chr6 30663917 + 111294 graph_last l 20 85 gactcagtgg 380 0.162167179602275 0.2 4 20 4 7 NM_054072 refGene chr18 37958141 + 64094 graph_last l 118 278 tctggagaca 381 0.162167179602275 0.342105263157895 13 38 14 13 NM_023429 refGene chr5 73246806 - 103823 graph_last l 272 558 ttgagggggg 382 0.162167179602275 0.342105263157895 13 38 14 13 NM_008143 refGene chr11 48425607 - 19538 graph_last l 36 169 gctgcagttg 383 0.167307953709798 5.16666666666667 31 6 34 2 taaatcaact 384 0.167307953709798 5.33333333333333 32 6 35 2 NM_024456 refGene chr11 100379176 - 23873 graph_last l 76 292 taaccaatca 385 0.167307953709798 5.33333333333333 32 6 35 2 tggctcggtc 386 0.167307953709798 0.622641509433962 99 159 110 55 NM_145425 refGene chr11 21455958 - 18147 graph_last l 931 1748 ttgttagtgc 387 0.186768550684664 2.8 56 20 62 7 aaaaacaaaa 388 0.194041461579469 Inf 18 0 20 0 genomic chr7 27865050 - 0 unique_long l 3 24 gtgactgaag 389 0.194041461579469 Inf 18 0 20 0 NM_025650 refGene chr10 82748131 - 14090 graph_last l 624 1104 ttgacagaca 390 0.194041461579469 3.41666666666667 41 12 45 4 atgtagtagt 391 0.195328613690154 3.28571428571429 46 14 51 5 agaggtgtag 392 0.197555430625941 8 24 3 27 1 NM_153526 refGene chr5_random 23332765 - 109461 graph_last 21 98 aacctcgctg 393 0.206683141757673 0.217391304347826 5 23 6 8 NM_146251 refGene chr2 25329142 + 72787 graph_last l 20 115 actcccttca 394 0.206683141757673 0.176470588235294 3 17 3 6 NM_008634 refGene chr13 97869372 + 37324 graph_last 0 16 atcaggagtg 395 0.206683141757673 0.176470588235294 3 17 3 6 atctttctgg 396 0.206683141757673 0.217391304347826 5 23 6 8 NM_024188 refGene chr15 4121571 + 44924 graph_last l 71 165 ccaatgcagc 397 0.206683141757673 0.176470588235294 3 17 3 6 NM_178060 refGene chr11 98348447 + 23676 graph_last l 25 69 ccatcttgac 398 0.206683141757673 0.176470588235294 3 17 3 6 NM_007422 refGene chr1 181698653 - 8873 graph_last l 15 50 ccctcatccc 399 0.206683141757673 0.176470588235294 3 17 3 6 NM_172948 refGene chr11 116492226 + 25261 graph_last l 15 54 ccctcctcca 400 0.206683141757673 0.217391304347826 5 23 6 8 NM_021514 refGene chr15 100439762 + 49830 graph_last l 79 198 cctgcaacca 401 0.206683141757673 0.176470588235294 3 17 3 6 ctccctcagg 402 0.206683141757673 0.176470588235294 3 17 3 6 gatttcccag 403 0.206683141757673 0.176470588235294 3 17 3 6 NM_025363 refGene chr6 38635518 + 111893 graph_last l 23 88 gcaagggtga 404 0.206683141757673 0.176470588235294 3 17 3 6 ggacagatgt 405 0.206683141757673 0.176470588235294 3 17 3 6 NM_007984 refGene chr5 141879729 + 108268 graph_last l 22 88 ggtcttcaga 406 0.206683141757673 Inf 19 0 21 0 gtgttaacca 407 0.206683141757673 0.523809523809524 44 84 49 29 NM_011740 refGene chr15 37102344 - 46293 graph_last l 111 235 taaattagtc 408 0.206683141757673 0.176470588235294 3 17 3 6 NM_026775 refGene chr12 81330718 - 29849 graph_last l 12 58 tgggatttat 409 0.206683141757673 0.176470588235294 3 17 3 6 NM_007478 refGene chr15_random 24126540 + 50902 graph_last 209 358 tttaataact 410 0.206683141757673 0.176470588235294 3 17 3 6 taaaagaaaa 411 0.207774030341783 2.42307692307692 63 26 70 9 gaataataaa 412 0.218214301566741 1.45882352941176 248 170 274 59 caaaatacat 413 0.223905161575151 2.56521739130435 59 23 65 8 NM_007874 refGene chr18 34562364 - 63762 graph_last l 6 73 ctagggacag 414 0.235057070345512 0.269230769230769 7 26 8 9 BC009091 knownGene chr19_random 7285586 - 71199 graph_last 1 5 aaaaagactc 415 0.235830072007453 0 0 9 0 3 NM_009197 refGene chrX 93603418 - 150551 graph_last 2 14 aaacacagga 416 0.235830072007453 0.0833333333333333 1 12 1 4 NM_017368 refGene chr2 91631056 + 76800 graph_last l 6 28 aaacatacac 417 0.235830072007453 0.142857142857143 2 14 2 5 NM_009059 refGene chr17 33557822 + 58793 graph_last 1 23 aaagtgggtg 418 0.235830072007453 0 0 9 0 3 NM_175407 refGene chr10 44596673 - 12030 graph_last 15 58 aaattggggg 419 0.235830072007453 0.142857142857143 2 14 2 5 BX514180 all_est chr10 44079063 - 11989 graph_last 0 3 aaatttaaag 420 0.235830072007453 0 0 9 0 3 NM_010238 refGene chr17 33754051 - 58821 graph_last l 10 48 aacaactggc 421 0.235830072007453 0 0 9 0 3 aacccagagc 422 0.235830072007453 0 0 9 0 3 NM_172266 refGene chr1 195567615 + 9722 graph_last l 17 43 aacgaacact 423 0.235830072007453 0 0 9 0 3 NM_021282 refGene chr7 132782731 - 125997 graph_last 0 235 aacgaggaat 424 0.235830072007453 8 24 3 26 1 NM_011129 refGene chr11 87149368 + 22798 graph_second 3 12 aaggccctgc 425 0.235830072007453 0 0 9 0 3 NM_023122 refGene chrX 154411423 - 152747 graph_last l 2 8 aatatacata 426 0.235830072007453 0.0833333333333333 1 12 1 4 NM_008740 refGene chr11 103485771 - 24251 graph_last l 67 132 aattaattta 427 0.235830072007453 0 0 9 0 3 aatttcttgg 428 0.235830072007453 0 0 9 0 3 acaacaataa 429 0.235830072007453 0 0 9 0 3 NM_016715 refGene chr5 108522692 + 105718 graph_last 3 30 accctgtgac 430 0.235830072007453 0 0 9 0 3 NM_008745 refGene chr13 58918489 + 35397 graph_last l 35 56 accttgctgt 431 0.235830072007453 0 0 9 0 3 AK005167 knownGene chr7 24244951 + 119924 graph_last l 55 397 actcctgtcc 432 0.235830072007453 0.507246376811594 35 69 39 24 actctagcca 433 0.235830072007453 0.0833333333333333 1 12 1 4 actgcagatg 434 0.235830072007453 0.0833333333333333 1 12 1 4 NM_153580 refGene chr7 118957076 + 125136 graph_last 22 61 actgctccca 435 0.235830072007453 0 0 9 0 3 actgtcagtt 436 0.235830072007453 0 0 9 0 3 genomic chr17 28803936 - 0 unique_long l 9 26 acttcattgg 437 0.235830072007453 0 0 9 0 3 BU522569 all_est chr11 68970314 + 21015 graph_last l 12 33 agagcccggc 438 0.235830072007453 0 0 9 0 3 agagctgtgg 439 0.235830072007453 0.142857142857143 2 14 2 5 AK078964 knownGene chr18 69900496 + 65810 graph_second 0 45 agcaaatcca 440 0.235830072007453 0 0 9 0 3 NM_008165 refGene chr11 56925522 + 20133 graph_last l 9 93 agccacagtt 441 0.235830072007453 0.0833333333333333 1 12 1 4 NM_011406 refGene chr17 82092536 - 61525 graph_last l 4 18 agccagaagc 442 0.235830072007453 0.0833333333333333 1 12 1 4 agcttgcctt 443 0.235830072007453 0 0 9 0 3 NM_178405 refGene chr1 176132176 - 8552 graph_last l 125 323 aggaaagcct 444 0.235830072007453 0 0 9 0 3 AK051233 all_mrna chr14 16044346 + 39487 graph_last 0 26 aggcagaggc 445 0.235830072007453 0 0 9 0 3 NM_175930 refGene chr12 113764797 + 31667 graph_last l 10 25 agggagggtg 446 0.235830072007453 0 0 9 0 3 aggttggccg 447 0.235830072007453 0 0 9 0 3 agtggtcaag 448 0.235830072007453 Inf 17 0 19 0 agttcaaggc 449 0.235830072007453 0 0 9 0 3 AI854083 all_est chr6 36936378 - 111753 graph_last l 2 10 ataagcttga 450 0.235830072007453 0 0 9 0 3 ataattctac 451 0.235830072007453 0 0 9 0 3 NM_007984 refGene chr5 141879724 - 108268 graph_last l 76 283 atagtaagct 452 0.235830072007453 3.21428571428571 45 14 50 5 NM_025333 refGene chr19 10425016 - 68003 graph_last l 5 15 atcaaaaagc 453 0.235830072007453 0 0 9 0 3 atgagaatgg 454 0.235830072007453 0.0833333333333333 1 12 1 4 NM_010223 refGene chr8 70775594 + 130947 graph_last 0 93 atgccccgcg 455 0.235830072007453 0 0 9 0 3 attaagaggg 456 0.235830072007453 Inf 17 0 19 0 genomic chr4 153978639 - 0 unique_long l 3 7 attgggtata 457 0.235830072007453 0 0 9 0 3 attgtcattg 458 0.235830072007453 0.0833333333333333 1 12 1 4 NM_145553 refGene chr4 131785171 + 97804 graph_last 0 20 atttaaaaaa 459 0.235830072007453 0 0 9 0 3 BM935473 all_est chr17 26602945 - 58073 graph_last l 35 109 atttttctgt 460 0.235830072007453 0.25 5 20 5 7 NM_020575 refGene chr2 60514790 + 74964 graph_last 3 20 caaatgaaca 461 0.235830072007453 0 0 9 0 3 genomic chr6 32020922 - 0 unique_long l 9 23 caagcttacc 462 0.235830072007453 0 0 9 0 3 NM_021515 refGene chr2 32907534 - 73459 graph_second 0 44 cacacagcat 463 0.235830072007453 7.66666666666667 23 3 25 1 cactcctaag 464 0.235830072007453 0 0 9 0 3 cagactgctc 465 0.235830072007453 0.260869565217391 6 23 7 8 cagcaatctc 466 0.235830072007453 0 0 9 0 3 cagcttctgc 467 0.235830072007453 0 0 9 0 3 NM_018741 refGene chr4 45100797 - 92863 graph_last 0 36 cagctttttt 468 0.235830072007453 7.66666666666667 23 3 25 1 genomic chr2 158569848 + 0 unique_long l 25 75 cagtcctccc 469 0.235830072007453 0 0 9 0 3 catacctgaa 470 0.235830072007453 3.88888888888889 35 9 39 3 genomic chr11 67258806 - 0 unique_long l 34 64 catagggtgc 471 0.235830072007453 0.0833333333333333 1 12 1 4 NM_013662 refGene chr17 56051344 - 60197 graph_last l 18 51 ccacgtggcc 472 0.235830072007453 0 0 9 0 3 cccacaaagg 473 0.235830072007453 0 0 9 0 3 NM_145556 refGene chr4 146738309 + 99182 graph_last 0 5 cccctggaaa 474 0.235830072007453 0 0 9 0 3 AK051528 all_mrna chr11 116477631 + 25266 graph_last 1 7 cccgtgaggc 475 0.235830072007453 0 0 9 0 3 ccctcctcag 476 0.235830072007453 0 0 9 0 3 cctcactgga 477 0.235830072007453 0 0 9 0 3 cctcggaaaa 478 0.235830072007453 0.5 32 64 35 22 AK016936 knownGene chr6 124387762 + 116782 graph_last 0 12 cctggactga 479 0.235830072007453 0 0 9 0 3 cctgtattcc 480 0.235830072007453 0 0 9 0 3 cctgtctccc 481 0.235830072007453 0 0 9 0 3 NM_010315 refGene chr14 14746598 + 39376 graph_last l 7 37 cctttattct 482 0.235830072007453 0.34375 11 32 12 11 NM_025285 refGene chr3 8633103 + 82940 graph_second 1 9 cgatatcagt 483 0.235830072007453 0 0 9 0 3 NM_011308 refGene chr11 61889224 - 20613 graph_last 7 31 cgccccatct 484 0.235830072007453 0.0833333333333333 1 12 1 4 NM_175012 refGene chr18 66101013 + 65570 graph_last b 6 16 cgcggctcgg 485 0.235830072007453 0.0833333333333333 1 12 1 4 AK007352 knownGene chr4 137235208 + 98340 graph_last l 535 956 cggtctagtc 486 0.235830072007453 0 0 9 0 3 BC046514 knownGene chr7 21191572 + 119611 graph_last l 208 366 cgtttactgg 487 0.235830072007453 3.77777777777778 34 9 38 3 NM_175459 refGene chr19 27806158 - 68958 graph_last 0 475 ctaactagtt 488 0.235830072007453 Inf 17 0 19 0 NM_026856 refGene chr5 105774526 - 105522 graph_last l 3 15 ctaagaaccg 489 0.235830072007453 0 0 9 0 3 genomic chr12 83328225 + 0 unique_long l 3 12 ctcagtccat 490 0.235830072007453 0 0 9 0 3 NM_028194 refGene chr5 72743176 - 103784 graph_last l 6 13 ctctgagaag 491 0.235830072007453 0 0 9 0 3 genomic chr3 125974948 - 0 unique_long l 2 6 ctgaaatcca 492 0.235830072007453 0 0 9 0 3 NM_178645 refGene chr11 76558320 + 21779 graph_last l 23 70 ctgcctcaca 493 0.235830072007453 0.142857142857143 2 14 2 5 BC051520 all_mrna chr2_random 6368419 + 82674 graph_last 0 15 ctgcctgcag 494 0.235830072007453 0 0 9 0 3 ctgctttctg 495 0.235830072007453 0 0 9 0 3 NM_153566 refGene chr4 123811833 + 97083 graph_last l 12 28 ctggatacta 496 0.235830072007453 0.142857142857143 2 14 2 5 NM_173400 refGene chr4 85304442 - 94706 graph_last 1 10 ctgttaagtg 497 0.235830072007453 0 0 9 0 3 cttaggcagc 498 0.235830072007453 0 0 9 0 3 NM_026023 refGene chr11 40360087 + 19152 graph_last 2 83 gaaaaatatt 499 0.235830072007453 0.260869565217391 6 23 7 8 gaaatgataa 500 0.235830072007453 0 0 9 0 3 AA073739 all_est chr19 8897935 + 67877 graph_last l 10 47 gaagccagcc 501 0.235830072007453 0 0 9 0 3 NM_029364 refGene chr10 124410646 + 16399 graph_last l 12 39 gaatgcaggg 502 0.235830072007453 0 0 9 0 3 NM_024197 refGene chr1 94385059 - 4734 graph_last l 141 410 gagatgcctg 503 0.235830072007453 0.25 5 20 5 7 AK090227 all_mrna chrX 132132840 - 151845 graph_last 2 10 gagattagtc 504 0.235830072007453 0.0833333333333333 1 12 1 4 NM_029555 refGene chr6 42357963 + 112149 graph_second 0 12 gagcaaccag 505 0.235830072007453 0 0 9 0 3 gagctgcaga 506 0.235830072007453 0 0 9 0 3 NM_011186 refGene chr14 45704939 - 41303 graph_second 0 7 gagtcattgt 507 0.235830072007453 0 0 9 0 3 NM_133236 refGene chr6 8320530 + 110253 graph_last 14 29 gagtgacaaa 508 0.235830072007453 0 0 9 0 3 gagtttagag 509 0.235830072007453 0 0 9 0 3 gatgaacccc 510 0.235830072007453 0 0 9 0 3 NM_007995 refGene chr2 25851813 - 72868 graph_last l 26 83 gatgacccag 511 0.235830072007453 0 0 9 0 3 gatgtggctg 512 0.235830072007453 1.77272727272727 117 66 129 23 gattctccga 513 0.235830072007453 Inf 17 0 19 0 NM_028259 refGene chr11 86062939 - 22667 graph_last 0 9 gattttaaaa 514 0.235830072007453 0 0 9 0 3 AK031181 knownGene chr1 121155993 + 5562 graph_last l 26 100 gcaaatgtac 515 0.235830072007453 8 24 3 26 1 gccaaggcct 516 0.235830072007453 0.142857142857143 2 14 2 5 NM_178699 refGene chr4 153809550 + 99794 graph_last l 6 29 gccagaggct 517 0.235830072007453 0 0 9 0 3 NM_018763 refGene chr9 97829313 - 140418 graph_last l 27 73 gccgtgctgg 518 0.235830072007453 0.0833333333333333 1 12 1 4 AK009092 knownGene chr5 99751450 - 105140 graph_last 29 80 gccgtgtgct 519 0.235830072007453 0.142857142857143 2 14 2 5 NM_153413 refGene chr9 109513400 + 141212 graph_last 2 11 gcctgagcac 520 0.235830072007453 0 0 9 0 3 NM_026899 refGene chr4 153846956 + 99801 graph_last l 68 159 gcctgccctg 521 0.235830072007453 0.142857142857143 2 14 2 5 gcctgtggtg 522 0.235830072007453 0.448275862068966 26 58 29 20 NM_011297 refGene chr13_random 1842983 + 38627 graph_last 0 891 gcctttatga 523 0.235830072007453 1.69230769230769 132 78 146 27 gcgacgcggg 524 0.235830072007453 0.0833333333333333 1 12 1 4 genomic chr5_random 2615367 - 0 unique_long l 264 923 gcgccagctc 525 0.235830072007453 0.46551724137931 27 58 30 20 genomic chr8 55036394 - 0 unique_long l 4 11 gctacctttc 526 0.235830072007453 0.0833333333333333 1 12 1 4 AA896727 all_est chr3 54020885 + 84913 graph_last 1 31 gctccaagga 527 0.235830072007453 0 0 9 0 3 NM_026481 refGene chr8 106976878 - 132961 graph_last l 26 72 gctgactctt 528 0.235830072007453 0.0833333333333333 1 12 1 4 gctgcctcca 529 0.235830072007453 0 0 9 0 3 gctgggaggt 530 0.235830072007453 0 0 9 0 3 gctgtcacct 531 0.235830072007453 0 0 9 0 3 NM_144942 refGene chr15 103584191 - 50177 graph_last l 6 35 gcttgacata 532 0.235830072007453 0.142857142857143 2 14 2 5 gcttgccctc 533 0.235830072007453 0 0 9 0 3 NM_024439 refGene chr7 58524814 + 121731 graph_last l 35 65 gcttttatgg 534 0.235830072007453 0 0 9 0 3 gcttttggag 535 0.235830072007453 0 0 9 0 3 NM_021921 refGene chr15 91147347 - 49270 graph_last l 19 73 gcttttggga 536 0.235830072007453 0.142857142857143 2 14 2 5 NM_033509 refGene chr1 175860516 - 8514 graph_last 4 19 ggaatggtct 537 0.235830072007453 0.0833333333333333 1 12 1 4 NM_008608 refGene chr14 45531325 + 41281 graph_last l 2 20 ggacgcccaa 538 0.235830072007453 0 0 9 0 3 ggagagctgt 539 0.235830072007453 0 0 9 0 3 NM_016680 refGene chr7 16538177 + 119318 graph_last 1 11 ggaggcaggg 540 0.235830072007453 0 0 9 0 3 ggaggtgtct 541 0.235830072007453 0 0 9 0 3 NM_008323 refGene chrX 63381310 - 149194 graph_second 0 21 ggcaacagga 542 0.235830072007453 0 0 9 0 3 NM_198013 refGene chr11 87771670 + 22857 graph_last l 22 44 ggcacacagc 543 0.235830072007453 0 0 9 0 3 BM936517 all_est chr18 32418272 + 63652 graph_last 2 11 ggcagacagt 544 0.235830072007453 0 0 9 0 3 NM_007881 refGene chr6 126661781 - 116898 graph_last l 106 385 ggcctgcttc 545 0.235830072007453 3.21428571428571 45 14 50 5 NM_011520 refGene chr4 129500658 + 97598 graph_last b 57 223 ggcgctcgta 546 0.235830072007453 0.368421052631579 14 38 15 13 ggctgcccta 547 0.235830072007453 0 0 9 0 3 gggacctagg 548 0.235830072007453 0.46551724137931 27 58 30 20 gggattggtg 549 0.235830072007453 0 0 9 0 3 AK017507 knownGene chr4 21817716 + 91710 graph_last l 11 45 gggctgcttt 550 0.235830072007453 0 0 9 0 3 NM_175543 refGene chr11 79268990 + 22077 graph_last l 39 112 gggctgggcc 551 0.235830072007453 0.142857142857143 2 14 2 5 BC019560 knownGene chr10 130328662 - 16651 graph_last l 7 58 ggggaagggc 552 0.235830072007453 Inf 16 0 18 0 NM_016765 refGene chr17 34722444 + 58919 graph_last l 4 64 gggggacctc 553 0.235830072007453 0.260869565217391 6 23 7 8 NM_010460 refGene chr11 95903970 + 23381 graph_last 0 19 ggggggtggg 554 0.235830072007453 0 0 9 0 3 gggtaggggt 555 0.235830072007453 0.260869565217391 6 23 7 8 NM_019686 refGene chr9 56661323 - 137777 graph_last l 8 24 gtatcactta 556 0.235830072007453 0.142857142857143 2 14 2 5 NM_008855 refGene chr7 114713807 + 124872 graph_last l 88 121 gtcactctag 557 0.235830072007453 0 0 9 0 3 NM_018770 refGene chr9 49857439 - 137345 graph_last l 17 44 gtccttgtac 558 0.235830072007453 0.142857142857143 2 14 2 5 NM_023328 refGene chr13 59235377 - 35436 graph_last l 4 15 gtgaaaattg 559 0.235830072007453 0 0 9 0 3 NM_028950 refGene chr2 14998028 - 72176 graph_last 0 6 gtgaagtcag 560 0.235830072007453 0 0 9 0 3 gtgagacaca 561 0.235830072007453 0 0 9 0 3 AK077185 knownGene chr12 47193284 - 27751 graph_last l 6 30 gtgcaaatcc 562 0.235830072007453 0 0 9 0 3 gtggagcaca 563 0.235830072007453 0.0833333333333333 1 12 1 4 NM_008748 refGene chr7 134139181 - 126141 graph_last l 18 102 gtggaggggc 564 0.235830072007453 0.142857142857143 2 14 2 5 NM_145596 refGene chr8 70109811 + 130866 graph_last 0 5 gtggcacact 565 0.235830072007453 0 0 9 0 3 NM_019685 refGene chr6 89947633 + 114790 graph_last l 44 104 gtggtttgga 566 0.235830072007453 7.66666666666667 23 3 25 1 BC059902 knownGene chr9 112986201 - 141560 graph_last l 5 29 gtgtgcctcc 567 0.235830072007453 0 0 9 0 3 NM_025647 refGene chr4 113869312 - 96275 graph_last 38 114 gttacttgtt 568 0.235830072007453 Inf 16 0 18 0 NM_028835 refGene chr6 116487900 - 116215 graph_last l 3 25 gtttgcctga 569 0.235830072007453 0.0833333333333333 1 12 1 4 NM_025550 refGene chr14 9444346 - 39138 graph_last l 32 106 taaagccact 570 0.235830072007453 8 24 3 26 1 genomic chr9 97828473 - 0 unique_both b 10 18 taaagcgttg 571 0.235830072007453 0 0 9 0 3 NM_144811 refGene chr15 81177041 + 48470 graph_last 0 7 taataaagaa 572 0.235830072007453 0 0 9 0 3 NM_177342 refGene chr19 47082444 - 70268 graph_last 322 850 taatactcaa 573 0.235830072007453 1.97674418604651 85 43 94 15 taatatttaa 574 0.235830072007453 0.0833333333333333 1 12 1 4 NM_152895 refGene chr1 137538600 + 6443 graph_last 2 24 taattcagga 575 0.235830072007453 0.0833333333333333 1 12 1 4 NM_025303 refGene chr1 16611261 - 594 graph_last 7 28 tacaatcaga 576 0.235830072007453 0.0833333333333333 1 12 1 4 AK030708 knownGene chr10 86847504 - 14428 graph_last l 5 42 tacccttgcc 577 0.235830072007453 0.25 5 20 5 7 tatacctgta 578 0.235830072007453 0 0 9 0 3 NM_010022 refGene chr3 119882053 + 88622 graph_last l 11 18 tatctgtata 579 0.235830072007453 0 0 9 0 3 NM_021477 refGene chr16 6895625 + 51276 graph_last l 42 94 tcagaggtgt 580 0.235830072007453 0.0833333333333333 1 12 1 4 tcagccccac 581 0.235830072007453 0.0833333333333333 1 12 1 4 NM_011751 refGene chr11 79975236 + 22170 graph_last l 8 27 tcatattcca 582 0.235830072007453 0.0833333333333333 1 12 1 4 tccagacctg 583 0.235830072007453 0.0833333333333333 1 12 1 4 tccggcttgt 584 0.235830072007453 Inf 16 0 18 0 tccgtgggtt 585 0.235830072007453 0 0 9 0 3 tcctcttccc 586 0.235830072007453 0.4 16 40 18 14 NM_011785 refGene chr1 180948039 + 8786 graph_last 0 3 tctaccttta 587 0.235830072007453 0 0 9 0 3 NM_010404 refGene chr11 99931508 - 23830 graph_last l 9 50 tctgccagaa 588 0.235830072007453 0 0 9 0 3 NM_008113 refGene chr17 25793383 - 57991 graph_last l 42 84 tctgccagga 589 0.235830072007453 0.142857142857143 2 14 2 5 tctgcttgga 590 0.235830072007453 0.0833333333333333 1 12 1 4 AK085367 knownGene chr8 119157008 - 133821 graph_last l 14 28 tcttagttct 591 0.235830072007453 0.0833333333333333 1 12 1 4 CK346937 all_est chr6 135531640 - 117451 graph_last 0 10 tcttcttaac 592 0.235830072007453 0 0 9 0 3 NM_144530 refGene chr1 136503213 - 6343 graph_last 6 26 tgaagacact 593 0.235830072007453 0 0 9 0 3 tgataaaagt 594 0.235830072007453 3.14285714285714 44 14 49 5 BY050640 all_est chr2 167679534 + 81520 graph_last l 17 124 tgcactattg 595 0.235830072007453 7.66666666666667 23 3 25 1 tgccttgtcc 596 0.235830072007453 0.0833333333333333 1 12 1 4 tgcctttaat 597 0.235830072007453 0 0 9 0 3 tgcttatacc 598 0.235830072007453 0 0 9 0 3 tggcaagcta 599 0.235830072007453 0 0 9 0 3 NM_025959 refGene chr14 37093216 + 40740 graph_last l 11 32 tggcaatcaa 600 0.235830072007453 0 0 9 0 3 NM_183252 refGene chr1 43338581 - 1858 graph_last l 30 194 tggcatactc 601 0.235830072007453 3.14285714285714 44 14 49 5 tgggctcctc 602 0.235830072007453 0 0 9 0 3 tggtggaatg 603 0.235830072007453 0.0833333333333333 1 12 1 4 NM_175328 refGene chr10 105944432 + 15398 graph_last l 7 22 tggttggctg 604 0.235830072007453 0 0 9 0 3 NM_024457 refGene chr10 120856422 - 16149 graph_last 28 67 tgtaactggt 605 0.235830072007453 0 0 9 0 3 tgttacgtat 606 0.235830072007453 0.0833333333333333 1 12 1 4 tgttatgaga 607 0.235830072007453 0.142857142857143 2 14 2 5 NM_178878 refGene chr5 28251467 - 101461 graph_last l 7 51 ttaaggggga 608 0.235830072007453 0 0 9 0 3 NM_019710 refGene chrX 139759704 + 152140 graph_last l 15 68 ttagattgtt 609 0.235830072007453 Inf 16 0 18 0 ttatcaagtg 610 0.235830072007453 0.142857142857143 2 14 2 5 S76838 knownGene chr8 13715222 - 128080 graph_last 2 9 ttcagcagcg 611 0.235830072007453 0 0 9 0 3 ttcctgtgtc 612 0.235830072007453 0.142857142857143 2 14 2 5 NM_009395 refGene chr11 78096024 - 21956 graph_last l 9 26 ttctaggcta 613 0.235830072007453 0 0 9 0 3 ttctggtttg 614 0.235830072007453 0 0 9 0 3 BE993913 all_est chrX 84016517 - 149990 graph_second 1 1 ttgaatagat 615 0.235830072007453 0 0 9 0 3 ttggaacaat 616 0.235830072007453 Inf 16 0 18 0 NM_010160 refGene chr2 6463548 - 71738 graph_last l 23 80 ttggtgcttc 617 0.235830072007453 Inf 17 0 19 0 NM_175162 refGene chr8 47049163 - 129791 graph_last 25 63 ttgtatatgt 618 0.235830072007453 0.25 5 20 5 7 BC048905 knownGene chr2 70026233 + 75473 graph_last 8 30 ttgtttttgg 619 0.235830072007453 0 0 9 0 3 tttagtttta 620 0.235830072007453 0 0 9 0 3 tttgaaactg 621 0.235830072007453 0 0 9 0 3 NM_052994 refGene chr10 62021810 + 12772 graph_last l 39 80 ttttagtaag 622 0.235830072007453 0.0833333333333333 1 12 1 4 BC019782 knownGene chr13 94915427 - 37110 graph_last l 5 53 ttttgtacaa 623 0.235830072007453 4.66666666666667 28 6 31 2 tttttaatgt 624 0.235830072007453 1.65517241379310 144 87 159 30 tttttatatt 625 0.235830072007453 0.0833333333333333 1 12 1 4 NM_015753 refGene chr2 45290945 - 74261 graph_last l 32 98 ctcgaataaa 626 0.238234482079101 4.83333333333333 29 6 32 2 ctgtcatttg 627 0.238234482079101 4.83333333333333 29 6 32 2 NM_024223 refGene chr12 108767448 + 31489 graph_last l 23 108 gctatggaga 628 0.238234482079101 4.83333333333333 29 6 32 2 cagatctttg 629 0.242581167988528 0.527777777777778 38 72 42 25 NM_023735 refGene chr1 128078440 - 5827 graph_last l 56 214 aagaaaaagt 630 0.243587118464827 3.66666666666667 33 9 36 3 NM_025507 refGene chr12 83687574 - 30036 graph_last l 62 175 gggaactaag 631 0.243587118464827 3.66666666666667 33 9 36 3 tagatcctag 632 0.243587118464827 3.66666666666667 33 9 36 3 NM_009946 refGene chr13 54167181 + 35031 graph_last l 243 540 atgacaaaga 633 0.246275732767869 0.461538461538462 24 52 27 18 NM_009838 refGene chrUn_random 75159037 + 146043 graph_last l 71 286 taagatcctt 634 0.246275732767869 3.07142857142857 43 14 48 5 NM_010421 refGene chr9 62025744 + 138265 graph_last 141 536 caatagagac 635 0.261069585270598 0.418604651162791 18 43 20 15 NM_021284 refGene chr6 146776526 - 118055 graph_last l 16 71 aaccgtactg 636 0.263114268828717 0.235294117647059 4 17 4 6 NM_009242 refGene chr11 55019713 - 20083 graph_last l 148 698 caaactctca 637 0.263114268828717 0.235294117647059 4 17 4 6 ctgctgtacc 638 0.263114268828717 0.235294117647059 4 17 4 6 NM_008538 refGene chr10 38262715 + 11621 graph_last 0 25 ctggcttctt 639 0.263114268828717 0.235294117647059 4 17 4 6 NM_008729 refGene chr15 31786949 - 46004 graph_last l 24 59 gtcactcaac 640 0.263114268828717 0.235294117647059 4 17 4 6 NM_020252 refGene chr17 90850761 - 62103 graph_last l 25 76 taatgtgttg 641 0.263114268828717 0.235294117647059 4 17 4 6 NM_011492 refGene chr10 82440175 - 14048 graph_last l 37 175 tgcacaggct 642 0.263114268828717 0.235294117647059 4 17 4 6 AK129145 knownGene chr4 150502502 + 99571 graph_last l 14 84 tgggctgctg 643 0.263114268828717 0.235294117647059 4 17 4 6 NM_025407 refGene chr9 111570399 + 141448 graph_last l 67 280 ttctggctgc 644 0.263114268828717 0.235294117647059 4 17 4 6 gagacggtgc 645 0.277553144088 0.375 12 32 13 11 cgccgccggc 646 0.28202810637626 1.65333333333333 124 75 137 26 atggcttaat 647 0.283802324509481 7.33333333333333 22 3 24 1 NM_023130 refGene chr2 155492314 + 80608 graph_last l 18 107 cattcttcct 648 0.283802324509481 7.33333333333333 22 3 24 1 NM_008060 refGene chr19 9080865 - 67898 graph_last b 90 266 cgatcccctt 649 0.283802324509481 7.33333333333333 22 3 24 1 NM_146170 refGene chr6 87848631 + 114579 graph_last l 13 86 gagccagtat 650 0.283802324509481 7.33333333333333 22 3 24 1 gtcagttaaa 651 0.283802324509481 7.33333333333333 22 3 24 1 NM_009790 refGene chr12 95769007 + 30604 graph_last l 442 827 actcggagcc 652 0.298562905756283 0.344827586206897 10 29 11 10 NM_013700 refGene chr6 126743522 - 116908 graph_last 25 140 atgtgaataa 653 0.298562905756283 Inf 14 0 16 0 NM_009955 refGene chr14 58532048 + 42295 graph_last l 9 34 cttacacgga 654 0.298562905756283 Inf 14 0 16 0 cttacatttc 655 0.298562905756283 Inf 14 0 16 0 gagctgtaat 656 0.298562905756283 Inf 14 0 16 0 NM_007379 refGene chr2 25714940 + 72843 graph_last l 17 177 ggagcaggac 657 0.298562905756283 Inf 14 0 16 0 NM_021519 refGene chr2 25828459 + 72856 graph_last l 161 295 gtcaaacgga 658 0.298562905756283 Inf 14 0 16 0 gtgccatatt 659 0.298562905756283 Inf 14 0 16 0 NM_173784 refGene chr11 32416958 + 18750 graph_last l 10 58 gtgctggtaa 660 0.298562905756283 Inf 14 0 16 0 NM_172691 refGene chr4 42317899 - 92612 graph_last l 68 126 taataaagtg 661 0.298562905756283 Inf 14 0 16 0 NM_021345 refGene chr9 67379153 - 138637 graph_last l 60 153 ttctagttgc 662 0.298562905756283 Inf 14 0 16 0 AK051587 all_mrna chr3 121887645 + 88723 graph_second 0 86 ctctctcttg 663 0.299192455379581 0.371428571428571 13 35 14 12 NM_011588 refGene chr7 10287113 - 118856 graph_last l 64 160 agaggtggtt 664 0.300259691926754 0.25 5 20 6 7 cacaaaataa 665 0.300259691926754 Inf 15 0 17 0 NM_144871 refGene chr19 3622286 + 67325 graph_last l 24 69 cacttgcagt 666 0.300259691926754 Inf 15 0 17 0 NM_025284 refGene chr6 73996446 + 113918 graph_last 0 37 ccacgaggtg 667 0.300259691926754 Inf 15 0 17 0 genomic chr11 114936877 + 0 unique_short s 0 123 cgctgatagg 668 0.300259691926754 Inf 15 0 17 0 NM_013818 refGene chr15 81007374 + 48440 graph_last l 4 36 gactgacgag 669 0.300259691926754 Inf 15 0 17 0 ggggctctgg 670 0.300259691926754 0.25 5 20 6 7 NM_008266 refGene chr3 30901904 + 83909 graph_last 81 183 gtaatcctgc 671 0.300259691926754 Inf 15 0 17 0 NM_026681 refGene chr12 96467483 - 30659 graph_last l 11 51 gtgagggtgt 672 0.300259691926754 Inf 15 0 17 0 gtgtctcaca 673 0.300259691926754 Inf 15 0 17 0 tagacgtact 674 0.300259691926754 Inf 15 0 17 0 AK081003 knownGene chr13 87441680 + 36626 graph_last l 80 200 taggatgttg 675 0.300259691926754 Inf 15 0 17 0 tctttaatcc 676 0.300259691926754 0.25 5 20 6 7 NM_027320 refGene chr11 101122702 - 23970 graph_last l 22 73 tgggaagtgt 677 0.300259691926754 0.25 5 20 6 7 tgttaagaag 678 0.300259691926754 0.25 5 20 6 7 NM_198163 refGene chr5 114768497 + 106277 graph_last l 77 143 ttaacactgt 679 0.300259691926754 Inf 15 0 17 0 NM_017469 refGene chr3 83866801 - 86251 graph_last l 59 125 ttaattgtgt 680 0.300259691926754 0.25 5 20 6 7 tgtataaaaa 681 0.312262855571533 0.666666666666667 98 147 108 51 BC023180 knownGene chr8 111357119 + 133337 graph_last l 5 105 aagctgtgag 682 0.312371912432825 4.33333333333333 26 6 29 2 NM_174851 refGene chr4 134484958 + 98075 graph_last 0 118 cctggaattt 683 0.312371912432825 4.33333333333333 26 6 29 2 U65636 knownGene chr3 97585791 - 87247 graph_last 33 172 atcagtggct 684 0.321245798768083 4.5 27 6 30 2 NM_009234 refGene chr12 21785186 + 26716 graph_last 1 124 tggaggctcc 685 0.326967138180931 3.44444444444444 31 9 34 3 NM_023799 refGene chr19 45889195 - 70128 graph_last l 64 233 caagaggcac 686 0.328878457272442 3.55555555555556 32 9 35 3 caataaactg 687 0.334703608309338 3.08333333333333 37 12 41 4 NM_008098 refGene chr6 35450366 - 111690 graph_last l 127 284 tacatccgaa 688 0.334703608309338 3.08333333333333 37 12 41 4 aagttcgatg 689 0.340718222503833 0.307692307692308 8 26 9 9 tcttctaatc 690 0.340718222503833 0.307692307692308 8 26 9 9 NM_177681 refGene chr5 142074881 + 108282 graph_last 0 15 acgacagaag 691 0.343708779262939 0.214285714285714 3 14 3 5 genomic chr12 95770479 - 0 unique_long l 21 70 caggattcct 692 0.343708779262939 0.214285714285714 3 14 3 5 caggcccttg 693 0.343708779262939 0.214285714285714 3 14 3 5 NM_029787 refGene chr15 84806195 - 48854 graph_last l 2 40 cagtcttgag 694 0.343708779262939 0.214285714285714 3 14 3 5 NM_024427 refGene chr9 69500644 - 138896 graph_last 1 57 cccgtagccc 695 0.343708779262939 0.214285714285714 3 14 3 5 NM_010906 refGene chr8 85570306 - 131845 graph_last l 14 48 cgcctctctc 696 0.343708779262939 0.214285714285714 3 14 3 5 NM_008997 refGene chr17 33385280 - 58766 graph_last 20 98 ctggtgggca 697 0.343708779262939 0.214285714285714 3 14 3 5 genomic chr19_random 15495638 + 0 unique_long l 1 7 gaggggcaag 698 0.343708779262939 0.214285714285714 3 14 3 5 NM_198250 refGene chr7 37356041 + 120667 graph_last l 27 125 gccgccgtga 699 0.343708779262939 0.214285714285714 3 14 3 5 ggagatttta 700 0.343708779262939 0.214285714285714 3 14 3 5 NM_010837 refGene chr7 90820373 - 123299 graph_last l 2 16 tagtgctccc 701 0.343708779262939 0.214285714285714 3 14 3 5 tgaaaatgta 702 0.343708779262939 0.214285714285714 3 14 3 5 NM_080456 refGene chr16 93512171 + 56067 graph_last 0 59 tgacaatatt 703 0.343708779262939 0.214285714285714 3 14 3 5 tgctctgcct 704 0.343708779262939 0.214285714285714 3 14 3 5 NM_028982 refGene chr6 136643905 + 117563 graph_last l 35 126 tggtgcggtg 705 0.343708779262939 0.214285714285714 3 14 3 5 ttcattctta 706 0.343708779262939 0.214285714285714 3 14 3 5 atactgaagc 707 0.348756451018980 0.615384615384615 64 104 71 36 attacggtgg 708 0.351354991802937 0.480769230769231 25 52 28 18 gccaagggtc 709 0.354333647116053 2.10344827586207 61 29 68 10 NM_010496 refGene chr12 19542546 - 26650 graph_last l 61 309 gggagcgaaa 710 0.357624470389846 2.45 49 20 54 7 NM_011968 refGene chr12 50762699 + 28033 graph_last l 37 125 cctgtctact 711 0.365262605336233 0.379310344827586 11 29 12 10 NM_009846 refGene chr10 45183755 + 12083 graph_last 14 421 ttatggaatt 712 0.365262605336233 1.46774193548387 182 124 201 43 ttttattttg 713 0.365262605336233 0.379310344827586 11 29 12 10 gcctctggtg 714 0.395610762421354 6.66666666666667 20 3 22 1 NM_024218 refGene chr16 56401884 + 54408 graph_last 37 280 aaggtcgagc 715 0.409350484397983 0.346153846153846 9 26 10 9 NM_019411 refGene chr11 51747475 + 19812 graph_last l 93 195 actgtagatg 716 0.409350484397983 0.346153846153846 9 26 10 9 gtctacagag 717 0.409350484397983 0.346153846153846 9 26 10 9 genomic chr15 80765184 - 0 unique_long l 14 54 agactccaca 718 0.409352207839376 0.294117647058824 5 17 5 6 atggtgatgt 719 0.409352207839376 0.294117647058824 5 17 5 6 NM_013826 refGene chr13 113678400 + 38296 graph_last 8 73 atttaaacag 720 0.409352207839376 7 21 3 23 1 cagacggaag 721 0.409352207839376 0.294117647058824 5 17 5 6 AK122380 knownGene chr8 84801596 + 131761 graph_last l 67 149 ctacagttcc 722 0.409352207839376 0.294117647058824 5 17 5 6 genomic chr13 43723207 + 0 unique_long l 8 47 ctgttgaatg 723 0.409352207839376 7 21 3 23 1 gaactgcagg 724 0.409352207839376 0.294117647058824 5 17 5 6 gctttgaatg 725 0.409352207839376 1.79591836734694 88 49 97 17 ggcaatcacc 726 0.409352207839376 0.294117647058824 5 17 5 6 NM_153410 refGene chr2 26614778 + 72938 graph_last l 18 78 ggtcctttct 727 0.409352207839376 7 21 3 23 1 gtttcaagag 728 0.409352207839376 0.294117647058824 5 17 5 6 ttcattctag 729 0.409352207839376 0.294117647058824 5 17 5 6 tacattttca 730 0.41309170554606 2.85714285714286 40 14 44 5 aggaaggcgg 731 0.416647079020093 1.640625 105 64 116 22 aaaataaaaa 732 0.425258379923613 Inf 14 0 15 0 aagaaaaaaa 733 0.425258379923613 Inf 13 0 14 0 NM_172656 refGene chr1 60524068 + 2683 graph_last l 11 72 caccctgtgg 734 0.425258379923613 Inf 14 0 15 0 NM_175752 refGene chr2 74006713 - 75776 graph_last 141 321 cagttattaa 735 0.425258379923613 Inf 14 0 15 0 NM_028835 refGene chr6 116538523 + 116215 graph_second 0 176 ctaaaaaaaa 736 0.425258379923613 Inf 13 0 14 0 ctgcctgaga 737 0.425258379923613 Inf 14 0 15 0 gaaaacatta 738 0.425258379923613 Inf 13 0 14 0 gaacatattt 739 0.425258379923613 Inf 13 0 14 0 NM_022332 refGene chr6 17754454 + 110650 graph_last l 5 29 gactatcagt 740 0.425258379923613 Inf 13 0 14 0 gagaaatata 741 0.425258379923613 Inf 13 0 14 0 gatgacttgc 742 0.425258379923613 Inf 13 0 14 0 NM_025739 refGene chr4 116180039 - 96508 graph_last 62 192 gattaaaaca 743 0.425258379923613 4.16666666666667 25 6 28 2 gattgtcaaa 744 0.425258379923613 Inf 13 0 14 0 NM_019796 refGene chr9 91413676 - 140127 graph_last 14 65 gcaaacaatc 745 0.425258379923613 Inf 14 0 15 0 gccacttcct 746 0.425258379923613 Inf 13 0 14 0 gcctcctcct 747 0.425258379923613 Inf 14 0 15 0 gtagctcaca 748 0.425258379923613 Inf 13 0 14 0 NM_177270 refGene chr5 92464338 - 104668 graph_last 40 111 gtgactgttc 749 0.425258379923613 Inf 14 0 15 0 NM_008251 refGene chr16 98082681 - 56348 graph_last l 29 115 taataaaaat 750 0.425258379923613 4 24 6 27 2 tcaataaaaa 751 0.425258379923613 Inf 13 0 14 0 NM_011508 refGene chr11 99905611 + 23826 graph_last l 115 284 tgaaggaaca 752 0.425258379923613 4.16666666666667 25 6 28 2 NM_026027 refGene chr18 36492704 + 63963 graph_last l 96 221 tgggttagac 753 0.425258379923613 4 24 6 27 2 tgtatgtctg 754 0.425258379923613 Inf 14 0 15 0 NM_178880 refGene chr16 93114726 + 56030 graph_last l 50 101 tgtattacag 755 0.425258379923613 Inf 13 0 14 0 tgtgaatgat 756 0.425258379923613 2.91666666666667 35 12 39 4 NM_138660 refGene chr11 98417334 + 23682 graph_last l 10 51 tgtgttgttt 757 0.425258379923613 Inf 14 0 15 0 ttataatata 758 0.425258379923613 2.91666666666667 35 12 39 4 NM_011239 refGene chr16 17844832 + 52007 graph_last 8 62 ttcaatggtg 759 0.425258379923613 Inf 13 0 14 0 tttattcctc 760 0.425258379923613 Inf 14 0 15 0 NM_009875 refGene chr6 136327709 + 117541 graph_last l 10 54 ttttgtgcat 761 0.425258379923613 Inf 14 0 15 0 ttttttttcc 762 0.425258379923613 Inf 14 0 15 0 NM_175114 refGene chr9 123859088 + 142240 graph_last l 8 43 aacaactccc 763 0.429385195112272 0.166666666666667 2 12 2 4 NM_153545 refGene chr11 120272391 + 25607 graph_last l 8 32 aaggctgcag 764 0.429385195112272 0.166666666666667 2 12 2 4 AI839905 all_est chrX 145838622 - 152391 graph_last l 12 31 acagtgcatt 765 0.429385195112272 0.166666666666667 2 12 2 4 accaagatct 766 0.429385195112272 0.540983606557377 33 61 37 21 NM_019675 refGene chr14 58090309 + 42274 graph_last l 25 323 accaatgaaa 767 0.429385195112272 1.94285714285714 68 35 75 12 NM_133801 refGene chr17 56988329 - 60299 graph_last l 15 47 accacaaagg 768 0.429385195112272 0.166666666666667 2 12 2 4 agagagagag 769 0.429385195112272 0.40625 13 32 14 11 NM_029432 refGene chr2 130945921 - 79188 graph_last 1 24 aggaagctga 770 0.429385195112272 0.166666666666667 2 12 2 4 NM_138660 refGene chr11 98391018 + 23682 graph_last l 12 38 aggtgctatc 771 0.429385195112272 0.166666666666667 2 12 2 4 NM_010310 refGene chr2 174705071 + 81983 graph_last 498 1272 atcaacaccg 772 0.429385195112272 0.527272727272727 29 55 32 19 NM_178880 refGene chr16 93114447 + 56030 graph_last l 9 27 atcagtacta 773 0.429385195112272 0.166666666666667 2 12 2 4 NM_027878 refGene chr10 90782898 + 14647 graph_last l 7 24 atctcagtag 774 0.429385195112272 0.166666666666667 2 12 2 4 atcttcctcc 775 0.429385195112272 0.166666666666667 2 12 2 4 caattcttta 776 0.429385195112272 0.166666666666667 2 12 2 4 NM_133971 refGene chr8 12325947 - 127998 graph_last 2 23 ccagcaggca 777 0.429385195112272 0.166666666666667 2 12 2 4 NM_198167 refGene chr17 45055011 - 59504 graph_last l 29 112 cgaggacagc 778 0.429385195112272 0.166666666666667 2 12 2 4 NM_153782 refGene chr11 109333175 + 24799 graph_last l 138 265 ctagcttaca 779 0.429385195112272 0.40625 13 32 14 11 ctgttaatac 780 0.429385195112272 0.166666666666667 2 12 2 4 AK013794 all_mrna chr7 73721823 + 122515 graph_last 2 13 cttaaacaaa 781 0.429385195112272 0.166666666666667 2 12 2 4 gaaatgctgc 782 0.429385195112272 0.166666666666667 2 12 2 4 gactgcccct 783 0.429385195112272 0.166666666666667 2 12 2 4 NM_018770 refGene chr9 49855196 - 137345 graph_last l 14 48 gagacactaa 784 0.429385195112272 0.166666666666667 2 12 2 4 NM_175484 refGene chr9 64772890 - 138441 graph_last l 18 58 gagctcaaaa 785 0.429385195112272 0.166666666666667 2 12 2 4 NM_009746 refGene chr7 119758378 - 125247 graph_last 1 8 gatttcgtat 786 0.429385195112272 0.166666666666667 2 12 2 4 NM_015827 refGene chr9 100985513 + 140652 graph_last l 21 46 gcctcccaaa 787 0.429385195112272 0.166666666666667 2 12 2 4 gctctgtgtc 788 0.429385195112272 0.166666666666667 2 12 2 4 gcttttattt 789 0.429385195112272 0.166666666666667 2 12 2 4 NM_177301 refGene chr3 93009576 - 86949 graph_last 70 267 ggcagcacaa 790 0.429385195112272 0.40625 13 32 14 11 ggcgcggacc 791 0.429385195112272 0.166666666666667 2 12 2 4 gtgaccgaag 792 0.429385195112272 0.40625 13 32 14 11 gtggtgcacg 793 0.429385195112272 0.166666666666667 2 12 2 4 gttattgatg 794 0.429385195112272 0.166666666666667 2 12 2 4 NM_010239 refGene chr19 9869099 + 67950 graph_last l 1046 3239 tcaggctgcc 795 0.429385195112272 1.875 75 40 83 14 NM_198033 refGene chr2 29451283 + 73116 graph_last l 4 22 tgaataatct 796 0.429385195112272 0.166666666666667 2 12 2 4 tggaggaatg 797 0.429385195112272 0.166666666666667 2 12 2 4 NM_012027 refGene chr11 59373856 + 20350 graph_last l 29 79 tggggacctg 798 0.429385195112272 0.166666666666667 2 12 2 4 AK129247 knownGene chr12 3991308 - 25954 graph_last 15 54 tgtgtgatgt 799 0.429385195112272 0.166666666666667 2 12 2 4 NM_008882 refGene chr1 198789464 + 9854 graph_last l 18 42 ttaaagtttt 800 0.429385195112272 0.166666666666667 2 12 2 4 NM_182991 refGene chr8 70745352 - 130941 graph_last l 49 119 ttctgagtat 801 0.429385195112272 0.166666666666667 2 12 2 4 ttctgggtag 802 0.429385195112272 0.40625 13 32 14 11 BF323184 all_est chr17 25418977 + 57928 graph_last l 74 194 ttctgtcagg 803 0.429385195112272 0.166666666666667 2 12 2 4 NM_022982 refGene chr16 17757201 + 51997 graph_last l 46 68 tttacagggt 804 0.429385195112272 0.166666666666667 2 12 2 4 NM_017367 refGene chr5 94551931 + 104851 graph_last 8 22 tttctttggt 805 0.429385195112272 0.166666666666667 2 12 2 4 NM_177466 refGene chr6 86719540 - 114494 graph_last l 16 60 ttttgagcac 806 0.429385195112272 0.166666666666667 2 12 2 4 cctcctccag 807 0.429816843953813 0.421052631578947 16 38 18 13 NM_016860 refGene chr19 46566407 - 70209 graph_last l 38 177 gactgcagtg 808 0.429816843953813 0.421052631578947 16 38 18 13 NM_198613 refGene chr7 13784132 + 119083 graph_last l 87 238 cagttcgatg 809 0.447622523774236 0.304347826086957 7 23 8 8 NM_172372 refGene chrX 6291577 + 147030 graph_last 33 178 tggggctggc 810 0.447622523774236 0.304347826086957 7 23 8 8 NM_028601 refGene chr11 6303680 + 17481 graph_last l 21 115 tggtgtctgc 811 0.447622523774236 0.304347826086957 7 23 8 8 NM_010699 refGene chr7 39739679 + 120908 graph_last 230 648 ccaaataaaa 812 0.459800192367726 2.11538461538462 55 26 61 9 cagaacccac 813 0.4672321014978 2.47058823529412 42 17 47 6 aatgatgcct 814 0.467594050421355 0.384615384615385 10 26 11 9 NM_026081 refGene chrX 124376325 + 151508 graph_last l 100 223 acacttgttg 815 0.467594050421355 0.384615384615385 10 26 11 9 taattttttt 816 0.479831994810338 0.447368421052632 17 38 19 13 NM_011889 refGene chr15 83851285 + 48775 graph_last l 216 593 tagatgttgc 817 0.483633500606135 1.65517241379310 96 58 106 20 NM_011634 refGene chr9 110584487 + 141318 graph_last l 146 323 cctgtgggtc 818 0.486847915951791 0.4375 14 32 15 11 cctttggcaa 819 0.508105374148853 2.71428571428571 38 14 42 5 NM_011026 refGene chr5 121995655 + 106813 graph_last 67 209 ctatcttgtc 820 0.508105374148853 2.71428571428571 38 14 42 5 AV342873 all_est chr1 163471941 - 7703 graph_last l 4 23 aaaggatggg 821 0.520899454752524 0.111111111111111 1 9 1 3 aaataacaat 822 0.520899454752524 0.111111111111111 1 9 1 3 aagaatgtag 823 0.520899454752524 0.294117647058824 5 17 6 6 genomic chr5 135975983 + 0 unique_long l 2 6 aaggcaagta 824 0.520899454752524 0.111111111111111 1 9 1 3 NM_027901 refGene chr5 29494221 - 101565 graph_last l 7 26 aaggctcctg 825 0.520899454752524 0.111111111111111 1 9 1 3 aatgtggcag 826 0.520899454752524 0.111111111111111 1 9 1 3 NM_008817 refGene chr7 6530850 + 118679 graph_last l 27 91 acaagtgcgt 827 0.520899454752524 0.111111111111111 1 9 1 3 NM_008144 refGene chr19 9160629 - 67907 graph_last l 15 68 acctgcgcct 828 0.520899454752524 0.111111111111111 1 9 1 3 NM_009786 refGene chr1 163743500 - 7720 graph_last b 19 109 acgcgaaaac 829 0.520899454752524 6 18 3 20 1 acgctgaata 830 0.520899454752524 6.33333333333333 19 3 21 1 acggggagag 831 0.520899454752524 0.111111111111111 1 9 1 3 NM_032002 refGene chr9 57340402 + 137846 graph_last 1 14 acttaagaaa 832 0.520899454752524 0.111111111111111 1 9 1 3 NM_145527 refGene chr2 91753611 - 76816 graph_last l 13 36 agaggacgga 833 0.520899454752524 0.111111111111111 1 9 1 3 NM_133901 refGene chr5 143720224 + 108421 graph_last 13 34 agattagtcc 834 0.520899454752524 0.111111111111111 1 9 1 3 agggacaggt 835 0.520899454752524 0.285714285714286 4 14 4 5 NM_011865 refGene chr6 87941239 - 114590 graph_second 0 8 atccaactgt 836 0.520899454752524 0.111111111111111 1 9 1 3 atctgtactc 837 0.520899454752524 2.75 33 12 36 4 NM_024499 refGene chr10 83415390 - 14155 graph_last l 39 135 atggcatcag 838 0.520899454752524 0.285714285714286 4 14 4 5 NM_144896 refGene chr3 87616277 + 86417 graph_last l 5 19 atggtggcag 839 0.520899454752524 0.111111111111111 1 9 1 3 NM_178119 refGene chr1 91822089 + 4551 graph_last l 4 21 attttacgtt 840 0.520899454752524 0.111111111111111 1 9 1 3 NM_133942 refGene chr7 122990909 + 125450 graph_last l 2 14 caaatgtgcc 841 0.520899454752524 0.111111111111111 1 9 1 3 NM_177646 refGene chr1 89884374 - 4476 graph_last 0 22 cacacagtgg 842 0.520899454752524 0.111111111111111 1 9 1 3 NM_177215 refGene chrX 39285082 + 148272 graph_last l 12 41 cacgtagtgc 843 0.520899454752524 0.111111111111111 1 9 1 3 NM_080638 refGene chr7 119108898 + 125151 graph_last l 13 39 cagcattcag 844 0.520899454752524 0.111111111111111 1 9 1 3 genomic chr4 129240676 - 0 unique_long l 22 104 cagccaggtg 845 0.520899454752524 0.111111111111111 1 9 1 3 NM_010327 refGene chr16 18227773 - 52048 graph_last l 6 31 caggagatgt 846 0.520899454752524 0.111111111111111 1 9 1 3 cagtgatttc 847 0.520899454752524 0.111111111111111 1 9 1 3 NM_010864 refGene chr9 77758330 + 139524 graph_last l 8 16 catatattca 848 0.520899454752524 0.111111111111111 1 9 1 3 catccacaag 849 0.520899454752524 0.111111111111111 1 9 1 3 ccaggcggtg 850 0.520899454752524 0.111111111111111 1 9 1 3 NM_016925 refGene chr8 125083415 + 134242 graph_last 5 22 cctaccttcc 851 0.520899454752524 0.111111111111111 1 9 1 3 NM_025835 refGene chr9 103410948 - 140823 graph_last l 9 41 cgggctccac 852 0.520899454752524 0.111111111111111 1 9 1 3 ctatttcaaa 853 0.520899454752524 3.11111111111111 28 9 31 3 NM_007881 refGene chr6 126665846 - 116898 graph_last l 15 53 ctcatcaccc 854 0.520899454752524 0.285714285714286 4 14 4 5 genomic chr2 127510118 - 0 unique_long l 2 13 ctgcaggcct 855 0.520899454752524 0.111111111111111 1 9 1 3 ctgtctggtt 856 0.520899454752524 0.111111111111111 1 9 1 3 NM_009383 refGene chr7 120686136 + 125323 graph_last l 3 17 cttactatgg 857 0.520899454752524 0.111111111111111 1 9 1 3 NM_008229 refGene chr10 38126090 + 11616 graph_last l 16 92 ctttatgtga 858 0.520899454752524 3.22222222222222 29 9 32 3 NM_029810 refGene chr19 46888273 - 70244 graph_last l 2 17 ctttcattat 859 0.520899454752524 0.111111111111111 1 9 1 3 ctttgcaatg 860 0.520899454752524 2.75 33 12 37 4 NM_019880 refGene chr17 28964297 - 58352 graph_last l 10 27 ctttgccctg 861 0.520899454752524 0.111111111111111 1 9 1 3 NM_018799 refGene chr4 128521641 + 97495 graph_last l 10 55 gaaagggctg 862 0.520899454752524 0.111111111111111 1 9 1 3 NM_026131 refGene chr13 55284194 - 35158 graph_last l 60 150 gaaataaaca 863 0.520899454752524 6 18 3 20 1 NM_146157 refGene chr4 138361968 + 98421 graph_last l 6 28 gaaatgagat 864 0.520899454752524 0.111111111111111 1 9 1 3 NM_174997 refGene chr1 35501828 - 1439 graph_last l 16 91 gaacttatgt 865 0.520899454752524 6.33333333333333 19 3 21 1 BC024678 knownGene chr5 77020270 + 104028 graph_last l 11 33 gaacttggaa 866 0.520899454752524 0.111111111111111 1 9 1 3 NM_133971 refGene chr8 12333881 - 127998 graph_last l 7 23 gaactttgga 867 0.520899454752524 0.111111111111111 1 9 1 3 NM_009129 refGene chr1 81220284 - 3857 graph_last l 55 117 gaattgatga 868 0.520899454752524 0.111111111111111 1 9 1 3 NM_022997 refGene chr8 86197927 + 131907 graph_last l 4 20 gacattagat 869 0.520899454752524 0.285714285714286 4 14 4 5 gacccagctc 870 0.520899454752524 0.111111111111111 1 9 1 3 NM_008568 refGene chr5 136635605 + 107939 graph_last l 68 253 gacctgagta 871 0.520899454752524 3.83333333333333 23 6 25 2 gactctggct 872 0.520899454752524 0.111111111111111 1 9 1 3 gattgatgca 873 0.520899454752524 0.294117647058824 5 17 6 6 gccccaggag 874 0.520899454752524 0.111111111111111 1 9 1 3 gcctagaact 875 0.520899454752524 0.285714285714286 4 14 4 5 NM_015816 refGene chr8 70946927 + 130970 graph_last l 20 174 gcggctcacc 876 0.520899454752524 6.33333333333333 19 3 21 1 NM_145989 refGene chr3 137227978 + 89500 graph_last l 6 21 gcgttatcag 877 0.520899454752524 0.111111111111111 1 9 1 3 NM_009308 refGene chr18 31773653 + 63593 graph_last l 23 112 gctacttaag 878 0.520899454752524 6.33333333333333 19 3 21 1 NM_010480 refGene chr12 106260821 - 31241 graph_last 20 90 gcttagaagt 879 0.520899454752524 0.111111111111111 1 9 1 3 NM_008801 refGene chr1 88425290 - 4331 graph_last l 20 37 ggaacaaacc 880 0.520899454752524 0.111111111111111 1 9 1 3 NM_009974 refGene chr8 96736483 - 132594 graph_last l 7 21 ggagatgaga 881 0.520899454752524 0.111111111111111 1 9 1 3 ggctctgtga 882 0.520899454752524 0.111111111111111 1 9 1 3 AK005166 knownGene chr9 111415950 - 141435 graph_last 0 6 gggactatgg 883 0.520899454752524 0.111111111111111 1 9 1 3 NM_008538 refGene chr10 38262710 - 11621 graph_last l 20 206 ggtgcccagt 884 0.520899454752524 0.347826086956522 8 23 9 8 AK129151 knownGene chr3 104499438 + 87776 graph_last 2 22 ggtgtgggct 885 0.520899454752524 0.111111111111111 1 9 1 3 ggtttgttca 886 0.520899454752524 0.294117647058824 5 17 6 6 NM_170592 refGene chr2 31095212 + 73291 graph_last l 18 69 gtacctgcca 887 0.520899454752524 0.285714285714286 4 14 4 5 NM_170760 refGene chr7 24529829 + 119946 graph_last l 11 43 gtcgcttctg 888 0.520899454752524 0.111111111111111 1 9 1 3 NM_199322 refGene chr10 83160312 + 14127 graph_last l 12 31 gtgcatagtg 889 0.520899454752524 0.111111111111111 1 9 1 3 NM_023173 refGene chr1 174644531 - 8404 graph_last l 4 11 gtggatgtca 890 0.520899454752524 0.111111111111111 1 9 1 3 NM_011707 refGene chr11 78072882 + 21953 graph_last l 20 59 gtgtgccagg 891 0.520899454752524 0.111111111111111 1 9 1 3 gttgtgattt 892 0.520899454752524 4 24 6 26 2 NM_008698 refGene chr11 4792057 + 17322 graph_last l 31 55 gttgtgctac 893 0.520899454752524 0.111111111111111 1 9 1 3 gtttcacttt 894 0.520899454752524 0.347826086956522 8 23 9 8 taaaagttgt 895 0.520899454752524 6 18 3 20 1 NM_009720 refGene chr11 55071811 - 20087 graph_last l 56 134 taataaagtc 896 0.520899454752524 6.33333333333333 19 3 21 1 tacaaaaagc 897 0.520899454752524 0.111111111111111 1 9 1 3 NM_008449 refGene chr2 50033637 + 74424 graph_last l 58 143 taccgtaccg 898 0.520899454752524 0.111111111111111 1 9 1 3 NM_019491 refGene chr13 17712207 - 32922 graph_last 22 61 tacgacgagt 899 0.520899454752524 0.111111111111111 1 9 1 3 NM_007508 refGene chr16 44062797 - 53860 graph_last 67 154 tactctgttg 900 0.520899454752524 0.111111111111111 1 9 1 3 NM_010017 refGene chr9 110841045 - 141352 graph_last l 21 70 tagagaggag 901 0.520899454752524 0.285714285714286 4 14 4 5 NM_053201 refGene chrX 95028023 + 150627 graph_last l 29 73 tattaggagt 902 0.520899454752524 0.111111111111111 1 9 1 3 tatttcagtg 903 0.520899454752524 0.111111111111111 1 9 1 3 tatttgggtt 904 0.520899454752524 0.111111111111111 1 9 1 3 NM_181750 refGene chr1 130934896 + 5979 graph_last l 77 108 tcaaaactat 905 0.520899454752524 0.111111111111111 1 9 1 3 tccctggcat 906 0.520899454752524 3.83333333333333 23 6 25 2 NM_010950 refGene chr7_random 33673352 + 127195 graph_last 49 91 tcggtgcccg 907 0.520899454752524 0.111111111111111 1 9 1 3 NM_018770 refGene chr9 49856825 + 137345 graph_second l 11 56 tcgttgaaag 908 0.520899454752524 0.111111111111111 1 9 1 3 NM_173748 refGene chr11 6004172 - 17451 graph_last l 17 39 tctccatcac 909 0.520899454752524 0.111111111111111 1 9 1 3 AK082350 knownGene chr8 11308623 + 127900 graph_last l 8 19 tctttctgcc 910 0.520899454752524 0.111111111111111 1 9 1 3 NM_023328 refGene chr13 59233431 - 35436 graph_last l 99 174 tgaactgtgt 911 0.520899454752524 6 18 3 20 1 tgaatggcct 912 0.520899454752524 4 24 6 26 2 NM_019771 refGene chr2 144020106 - 79829 graph_last l 11 68 tgactgcctg 913 0.520899454752524 0.111111111111111 1 9 1 3 NM_011627 refGene chr9 88576767 + 140001 graph_last 0 6 tgagtgcagc 914 0.520899454752524 0.111111111111111 1 9 1 3 tgcaagaccc 915 0.520899454752524 0.111111111111111 1 9 1 3 tgcagtcatc 916 0.520899454752524 4 24 6 26 2 tgctgagatc 917 0.520899454752524 0.294117647058824 5 17 6 6 NM_007477 refGene chr11 103649160 + 24264 graph_last l 16 102 tggtgattgg 918 0.520899454752524 4 24 6 26 2 NM_013879 refGene chr5 114215618 + 106194 graph_last l 95 218 tgtgccccag 919 0.520899454752524 0.285714285714286 4 14 4 5 NM_009061 refGene chr1 147167009 - 6919 graph_last l 42 62 ttaccacata 920 0.520899454752524 0.111111111111111 1 9 1 3 NM_013855 refGene chr17 23976949 + 57786 graph_second 0 21 ttataaactg 921 0.520899454752524 0.111111111111111 1 9 1 3 NM_027287 refGene chr3 156136611 + 90410 graph_second 1 13 ttcaaggata 922 0.520899454752524 0.111111111111111 1 9 1 3 NM_011879 refGene chr18 36874885 + 64015 graph_last l 54 121 ttccattaaa 923 0.520899454752524 6.33333333333333 19 3 21 1 NM_008974 refGene chr4 128752984 - 97529 graph_last 9 35 ttctcataag 924 0.520899454752524 0.111111111111111 1 9 1 3 ttctcatcac 925 0.520899454752524 0.111111111111111 1 9 1 3 NM_019978 refGene chr3 56947015 + 85071 graph_last l 80 133 ttcttaaact 926 0.520899454752524 0.285714285714286 4 14 4 5 tttaacaaaa 927 0.520899454752524 0.111111111111111 1 9 1 3 tttataaaat 928 0.520899454752524 0.111111111111111 1 9 1 3 BC046968 knownGene chr5 143048358 - 108379 graph_last l 17 41 tttctcagct 929 0.520899454752524 0.111111111111111 1 9 1 3 NM_175153 refGene chr9 67378684 + 138630 graph_last 1 19 tttttaaatg 930 0.520899454752524 0.285714285714286 4 14 4 5 NM_025735 refGene chr2 155903051 + 80638 graph_last l 170 382 ttcgggttgc 931 0.533388584998157 0.413793103448276 12 29 13 10 aaaatgttgt 932 0.547833413078282 Inf 12 0 13 0 aagagttatg 933 0.547833413078282 Inf 12 0 13 0 caaaagaatt 934 0.547833413078282 Inf 12 0 13 0 catctttatg 935 0.547833413078282 Inf 12 0 13 0 gcaatctgat 936 0.547833413078282 2.35294117647059 40 17 44 6 NM_178624 refGene chr9 116584101 + 141769 graph_last l 13 60 gcaccagcag 937 0.547833413078282 Inf 12 0 13 0 NM_009440 refGene chrX 93387324 + 150509 graph_last l 3 24 gccccgatgg 938 0.547833413078282 Inf 12 0 13 0 NM_012032 refGene chr2 164237246 + 81211 graph_second 8 58 gtgaaaaaaa 939 0.547833413078282 Inf 12 0 13 0 NM_010191 refGene chr14 54293259 + 41935 graph_last l 82 219 gtttgctgtg 940 0.547833413078282 Inf 12 0 13 0 NM_011543 refGene chr11 51871878 + 19827 graph_last l 95 143 taaaaattaa 941 0.547833413078282 Inf 12 0 13 0 NM_133733 refGene chr9 42367530 - 136826 graph_last 1 31 tactgggaga 942 0.547833413078282 Inf 12 0 13 0 tacttgtatg 943 0.547833413078282 Inf 12 0 13 0 tctgagtggt 944 0.547833413078282 Inf 12 0 13 0 tgaagacagt 945 0.547833413078282 Inf 12 0 13 0 NM_026757 refGene chr11 69806545 - 21121 graph_last l 16 85 tgccctcgcc 946 0.547833413078282 Inf 12 0 13 0 tggttgctgg 947 0.547833413078282 0.68103448275862 79 116 87 40 ttcattattg 948 0.547833413078282 2.35294117647059 40 17 44 6 ttgagaatga 949 0.547833413078282 Inf 12 0 13 0 ttgctgtgtg 950 0.547833413078282 Inf 12 0 13 0 NM_172557 refGene chr11 50011433 + 19677 graph_last l 27 143 tttgttaatt 951 0.551547467899346 0.521739130434783 24 46 27 16 NM_012053 refGene chr15 78134217 + 48155 graph_last 84 491 aatcctgtgg 952 0.556652500329148 0.608695652173913 42 69 46 24 ccagaacaga 953 0.556652500329148 1.37410071942446 191 139 211 48 aaggaaatgg 954 0.556830542652192 0.545454545454545 30 55 33 19 tgtatgtctt 955 0.556830542652192 0.545454545454545 30 55 33 19 cccacaaggt 956 0.576834622624487 2.08695652173913 48 23 53 8 NM_007747 refGene chr9 59643792 + 138041 graph_last l 348 754 taatagtaac 957 0.576834622624487 2.08695652173913 48 23 53 8 NM_177049 refGene chr14 46207444 - 41370 graph_last l 62 211 gaatttggga 958 0.582656251510174 0.457142857142857 16 35 18 12 AF093677 knownGene chr1 24786836 + 1000 graph_last 117 388 agtggaggac 959 0.584715257697019 0.391304347826087 9 23 10 8 NM_133195 refGene chr18 26103515 - 63468 graph_last l 109 272 cgcgctctct 960 0.584715257697019 0.391304347826087 9 23 10 8 NM_007988 refGene chr11 120360184 - 25618 graph_last l 15 88 atgcagggcc 961 0.58647409647439 0.3 6 20 7 7 NM_133206 refGene chr8 113316144 + 133479 graph_last 4 51 caggataggt 962 0.58647409647439 0.3 6 20 7 7 NM_019831 refGene chrX 91306980 - 150325 graph_last l 22 69 cccacccttg 963 0.58647409647439 0.3 6 20 7 7 NM_023134 refGene chr14 35775081 + 40665 graph_last 0 51 ctgtcagtgg 964 0.58647409647439 0.3 6 20 7 7 NM_026757 refGene chr11 69809604 - 21121 graph_last l 84 286 gtgcgctaga 965 0.58647409647439 0.3 6 20 7 7 NM_011241 refGene chr15 83217970 - 48702 graph_last 71 146 ttgggcctac 966 0.58647409647439 0.3 6 20 7 7 NM_025998 refGene chr4_random 10334812 + 100058 graph_last l 13 170 caggttggtt 967 0.588058182629968 2.5 35 14 39 5 gctccctctg 968 0.591911318598896 2.57142857142857 36 14 40 5 NM_009790 refGene chr12 95767982 + 30604 graph_last l 461 1256 acaaacttag 969 0.595766992458582 0.597222222222222 43 72 48 25 gtcacaccac 970 0.595766992458582 0.448275862068966 13 29 14 10 NM_007471 refGene chr16 86207432 - 55668 graph_last l 378 1097 atagctttct 971 0.624682097308312 0.581818181818182 32 55 35 19 NM_010890 refGene chr9 75258934 + 139403 graph_last l 4 62 aaaacatctc 972 0.649621638033252 5.33333333333333 16 3 18 1 NM_008198 refGene chr17 34516598 + 58890 graph_last l 9 34 aagctggatt 973 0.649621638033252 0.25 3 12 3 4 NM_020027 refGene chr17 34814955 - 58932 graph_last 15 63 aaggggaaag 974 0.649621638033252 0.25 3 12 3 4 NM_011543 refGene chr11 51871817 - 19827 graph_last l 19 86 aagtaagtgt 975 0.649621638033252 0.25 3 12 3 4 NM_008855 refGene chr7 114719529 + 124872 graph_last l 62 148 accggtattt 976 0.649621638033252 0.25 3 12 3 4 aggcctggct 977 0.649621638033252 0.25 3 12 3 4 aggctcattt 978 0.649621638033252 5.33333333333333 16 3 18 1 NM_020004 refGene chr11 100368729 - 23871 graph_last l 11 37 aggggccttg 979 0.649621638033252 0.25 3 12 3 4 NM_019400 refGene chr11 70549148 - 21202 graph_last l 73 202 atgatggaca 980 0.649621638033252 5.33333333333333 16 3 18 1 NM_008881 refGene chr6 90767660 - 114864 graph_last l 4 28 attagctgtc 981 0.649621638033252 0.25 3 12 3 4 NM_011522 refGene chr17 24278928 - 57816 graph_last l 31 63 attgtgtatt 982 0.649621638033252 0.25 3 12 3 4 caaatgaagt 983 0.649621638033252 5.33333333333333 16 3 18 1 NM_026467 refGene chr9 69425322 + 138888 graph_last l 20 143 cacagactgt 984 0.649621638033252 5.33333333333333 16 3 18 1 cagaagaaag 985 0.649621638033252 5.33333333333333 16 3 18 1 NM_178694 refGene chr2 30371895 - 73220 graph_last l 34 102 cagcacttgg 986 0.649621638033252 0.25 3 12 3 4 caggaaagct 987 0.649621638033252 0.25 3 12 3 4 ccacactgtc 988 0.649621638033252 5.33333333333333 16 3 18 1 NM_178252 refGene chr7 24426999 - 119943 graph_last l 11 49 cctcccgaca 989 0.649621638033252 0.25 3 12 3 4 NM_026585 refGene chr6 117890386 + 116329 graph_last b 14 37 cggggccttc 990 0.649621638033252 0.25 3 12 3 4 ctggaagagg 991 0.649621638033252 0.25 3 12 3 4 ctggagctag 992 0.649621638033252 0.25 3 12 3 4 NM_009803 refGene chr1 175076870 - 8438 graph_last l 16 77 gaaagaggga 993 0.649621638033252 5.33333333333333 16 3 18 1 NM_026238 refGene chr17 25379974 - 57923 graph_last 37 99 gagccctata 994 0.649621638033252 0.25 3 12 3 4 gaggcctctg 995 0.649621638033252 0.25 3 12 3 4 gccagggcca 996 0.649621638033252 0.25 3 12 3 4 NM_178880 refGene chr16 93083526 + 56030 graph_last l 24 166 gcggccgaca 997 0.649621638033252 0.25 3 12 3 4 gctccctcat 998 0.649621638033252 0.25 3 12 3 4 NM_008985 refGene chr1 76797240 - 3697 graph_last l 126 226 ggaagcagac 999 0.649621638033252 0.25 3 12 3 4 NM_153550 refGene chr16 35427449 + 53240 graph_second 0 15 ggttctcagt 1000 0.649621638033252 0.25 3 12 3 4 NM_153150 refGene chr16 17530303 - 51984 graph_last l 5 28 gtcaggtcac 1001 0.649621638033252 0.25 3 12 3 4 NM_144528 refGene chr10 82062156 - 13989 graph_last l 14 41 gtctgtggag 1002 0.649621638033252 0.25 3 12 3 4 gtgacctggc 1003 0.649621638033252 0.25 3 12 3 4 gtgctcagtg 1004 0.649621638033252 0.25 3 12 3 4 NM_008687 refGene chr4 80897419 - 94453 graph_last l 8 69 taacaagcct 1005 0.649621638033252 5.33333333333333 16 3 18 1 NM_146083 refGene chr17 80905882 - 61430 graph_last l 4 44 tagctaagga 1006 0.649621638033252 5.33333333333333 16 3 18 1 tcgctgcttt 1007 0.649621638033252 0.25 3 12 3 4 NM_053073 refGene chr4 106735012 + 95875 graph_last l 8 27 tcttagtaac 1008 0.649621638033252 0.25 3 12 3 4 AK034177 knownGene chr6 139815698 - 117726 graph_last l 12 24 tgaacaactt 1009 0.649621638033252 0.25 3 12 3 4 NM_011049 refGene chrX 19252870 + 147565 graph_last l 27 102 tgcgagcttg 1010 0.649621638033252 0.25 3 12 3 4 NM_009297 refGene chr11 77778400 - 21923 graph_last l 23 81 tggagcagtg 1011 0.649621638033252 0.25 3 12 3 4 BC049852 knownGene chr7 15939737 + 119234 graph_last l 4 21 tgggcagcag 1012 0.649621638033252 0.25 3 12 3 4 NM_029541 refGene chrX 124607824 + 151527 graph_last 4 30 tgtaacttac 1013 0.649621638033252 0.25 3 12 3 4 NM_178220 refGene chr7 92038340 - 123429 graph_last l 30 70 tgtgaagggc 1014 0.649621638033252 0.25 3 12 3 4 ttatttttag 1015 0.649621638033252 0.25 3 12 3 4 NM_007461 refGene chr7 57186333 + 121660 graph_last l 31 79 tttaggctcc 1016 0.649621638033252 0.25 3 12 3 4 NM_145614 refGene chr9 52671516 - 137570 graph_last l 5 37 ttttcagtgt 1017 0.649621638033252 0.25 3 12 3 4 NM_182807 refGene chr10 126835352 + 16544 graph_last l 10 75 cgtatcaata 1018 0.65228681128093 2.88888888888889 26 9 29 3 NM_175266 refGene chr9 113882938 + 141650 graph_last l 48 97 ttgtggagtg 1019 0.658531562995919 0.35 7 20 8 7 aagaaaacat 1020 0.658983506537371 5.66666666666667 17 3 19 1 NM_008632 refGene chr1 68044382 - 3222 graph_last 0 44 attggcattt 1021 0.658983506537371 5.66666666666667 17 3 19 1 NM_146188 refGene chr7 28331257 - 120162 graph_last l 4 44 ccataaagaa 1022 0.658983506537371 5.66666666666667 17 3 19 1 NM_019829 refGene chr19 9252464 - 67921 graph_last l 37 132 ctgcagccta 1023 0.658983506537371 5.66666666666667 17 3 19 1 ctgtaaatag 1024 0.658983506537371 5.66666666666667 17 3 19 1 NM_011278 refGene chr5 32900848 + 101872 graph_last l 86 183 ggtatcagtc 1025 0.658983506537371 5.66666666666667 17 3 19 1 NM_009551 refGene chr19 21463372 + 68566 graph_last 171 278 ctattcagca 1026 0.665530523529936 3 27 9 30 3 tgtaagtctg 1027 0.665530523529936 3 27 9 30 3 AK021267 knownGene chr11 6326115 - 17486 graph_last l 25 176 tgttgattgg 1028 0.665530523529936 3 27 9 30 3 NM_009227 refGene chr1 136480038 - 6340 graph_last 8 94 ctaaaaggag 1029 0.666498972502939 3.66666666666667 22 6 24 2 NM_010267 refGene chr1 17333840 + 648 graph_last l 9 82 ggaaattaaa 1030 0.666498972502939 3.5 21 6 23 2 NM_010562 refGene chr7 97874520 + 123908 graph_last l 55 216 ggagggatca 1031 0.666498972502939 3.5 21 6 23 2 NM_146019 refGene chr11 68914658 - 21006 graph_last l 49 176 gggaaccccc 1032 0.666498972502939 3.66666666666667 22 6 24 2 NM_023665 refGene chr4 133782708 + 98031 graph_last l 65 174 gttgaggttt 1033 0.666498972502939 3.66666666666667 22 6 24 2 NM_010014 refGene chr4 103604536 + 95607 graph_last l 10 76 taaaacggtt 1034 0.666498972502939 3.66666666666667 22 6 24 2 NM_019979 refGene chr14 24510980 + 40008 graph_last l 22 151 tatttagtcc 1035 0.666498972502939 3.66666666666667 22 6 24 2 tgaggatgaa 1036 0.666498972502939 3.5 21 6 23 2 NM_017472 refGene chr10 44143976 + 11990 graph_last l 45 113 aaagattaat 1037 0.676267917941548 0.357142857142857 5 14 5 5 NM_023312 refGene chr8 70094469 - 130862 graph_last l 90 351 aaggatgtgc 1038 0.676267917941548 0.357142857142857 5 14 5 5 aaggggggca 1039 0.676267917941548 0.357142857142857 5 14 5 5 NM_033610 refGene chr13 54537749 - 35079 graph_last l 191 518 aataaagcca 1040 0.676267917941548 0.357142857142857 5 14 5 5 NM_019408 refGene chr19 46501920 - 70198 graph_last l 130 184 cccctaattt 1041 0.676267917941548 0.357142857142857 5 14 5 5 NM_029999 refGene chr17 73357998 + 61062 graph_last l 13 53 cctgttgtga 1042 0.676267917941548 0.357142857142857 5 14 5 5 NM_053074 refGene chr7 37773215 + 120706 graph_last l 13 68 cgcgcgctgg 1043 0.676267917941548 0.357142857142857 5 14 5 5 NM_011670 refGene chr5_random 2620508 + 109059 graph_last 5 44 ctgggccgtg 1044 0.676267917941548 0.357142857142857 5 14 5 5 gggatataaa 1045 0.676267917941548 0.357142857142857 5 14 5 5 gtatttaata 1046 0.676267917941548 0.357142857142857 5 14 5 5 NM_145564 refGene chr5 117083771 + 106435 graph_last l 18 48 gtgggagtct 1047 0.676267917941548 0.357142857142857 5 14 5 5 NM_007790 refGene chr19 53236186 - 70495 graph_last l 4 31 gttaactgaa 1048 0.676267917941548 0.357142857142857 5 14 5 5 NM_028117 refGene chr2 119198414 - 78340 graph_last 0 39 tgcttggcta 1049 0.676267917941548 0.357142857142857 5 14 5 5 AK052736 knownGene chr8 79829375 + 131489 graph_second 0 32 tgtactgtat 1050 0.676267917941548 0.357142857142857 5 14 5 5 NM_007911 refGene chr11 69125583 - 21028 graph_last l 15 97 ttggccacct 1051 0.676267917941548 0.357142857142857 5 14 5 5 NM_019699 refGene chr19 9946997 - 67959 graph_last l 31 182 agccaagaga 1052 0.694766096042969 0.5 19 38 21 13 ccaggagagg 1053 0.694766096042969 0.5 19 38 21 13 NM_028439 refGene chr1 122653373 - 5657 graph_last l 69 344 aagacctatg 1054 0.697499288565132 0.423076923076923 11 26 12 9 ttgactttat 1055 0.742264324055434 0.7 77 110 85 38 AA152957 all_est chr5 110450981 + 105914 graph_last l 3 36 aaactgagtg 1056 0.769762846331231 Inf 10 0 11 0 CD352670 all_est chr5 122023911 - 106823 graph_last l 33 377 aacttaaaaa 1057 0.769762846331231 0.461538461538462 12 26 13 9 aataaactca 1058 0.769762846331231 Inf 10 0 11 0 NM_181734 refGene chr2 164232953 + 81207 graph_last l 2 37 actgggtctc 1059 0.769762846331231 Inf 10 0 11 0 agggtgcagt 1060 0.769762846331231 Inf 10 0 11 0 NM_026499 refGene chr2 163549271 + 81143 graph_last l 12 46 agtgtgaaac 1061 0.769762846331231 Inf 10 0 11 0 atgacaatag 1062 0.769762846331231 Inf 10 0 11 0 atgtactcgg 1063 0.769762846331231 Inf 10 0 11 0 NM_007622 refGene chr11 96391602 - 23456 graph_last 7 33 attcaagaca 1064 0.769762846331231 Inf 10 0 11 0 NM_026137 refGene chrX 6684053 - 147079 graph_last l 23 110 attttggggg 1065 0.769762846331231 0.4 8 20 9 7 atttttatac 1066 0.769762846331231 Inf 10 0 11 0 NM_009383 refGene chr7 120685858 - 125323 graph_last l 10 44 caaggaaatg 1067 0.769762846331231 Inf 10 0 11 0 NM_010411 refGene chr18 38054458 - 64117 graph_last l 53 97 caaggtgaac 1068 0.769762846331231 0.4 8 20 9 7 NM_028044 refGene chr3 124872028 + 88810 graph_last l 44 155 caggtttggg 1069 0.769762846331231 Inf 10 0 11 0 NM_134044 refGene chr12 83476305 - 30013 graph_last l 8 58 cctacactcc 1070 0.769762846331231 0.4 8 20 9 7 NM_134129 refGene chr19 10634110 + 68016 graph_last 41 178 cctgctctgt 1071 0.769762846331231 0.4 8 20 9 7 NM_183172 refGene chr10 87338202 + 14472 graph_last l 5 39 cgcatacata 1072 0.769762846331231 Inf 10 0 11 0 NM_027360 refGene chr12 107529636 - 31397 graph_last 192 512 gaacatcact 1073 0.769762846331231 2.1 42 20 47 7 NM_134037 refGene chr11 100060301 + 23847 graph_last 1 23 gaacatttca 1074 0.769762846331231 Inf 10 0 11 0 gacaaaggtg 1075 0.769762846331231 Inf 10 0 11 0 gacgagatgg 1076 0.769762846331231 Inf 10 0 11 0 NM_011602 refGene chr4 42856843 - 92658 graph_last l 31 78 gatgaagtat 1077 0.769762846331231 Inf 10 0 11 0 NM_175015 refGene chr2 74302937 + 75802 graph_last l 42 118 gcaaacaaga 1078 0.769762846331231 Inf 10 0 11 0 gcatcttctg 1079 0.769762846331231 Inf 10 0 11 0 NM_011975 refGene chr7 101561513 - 124129 graph_last 2 38 gcggtggcag 1080 0.769762846331231 Inf 10 0 11 0 NM_009736 refGene chr4 40984051 - 92417 graph_last l 51 206 gctgccaggg 1081 0.769762846331231 0.461538461538462 12 26 13 9 NM_026614 refGene chr6 24390570 - 110909 graph_last 71 261 ggagccattg 1082 0.769762846331231 0.461538461538462 12 26 13 9 NM_011252 refGene chrX 47027902 - 148647 graph_last l 3 21 ggcaatatta 1083 0.769762846331231 Inf 10 0 11 0 NM_177583 refGene chr9 69250717 - 138875 graph_last l 7 33 gtaagtcttg 1084 0.769762846331231 Inf 10 0 11 0 AK122429 knownGene chr8 80319227 + 131527 graph_last l 5 36 gtgtgatgct 1085 0.769762846331231 Inf 10 0 11 0 NM_025983 refGene chr2 175045195 - 81991 graph_last 59 380 gttcactttc 1086 0.769762846331231 1.88461538461538 49 26 54 9 NM_025279 refGene chr13 58181971 - 35372 graph_last l 25 56 taaagtttgt 1087 0.769762846331231 Inf 10 0 11 0 tcacaatgag 1088 0.769762846331231 Inf 10 0 11 0 NM_177699 refGene chr8 106814644 - 132950 graph_last l 2 22 tctttattca 1089 0.769762846331231 Inf 10 0 11 0 NM_021884 refGene chr7 39774152 - 120912 graph_last l 38 91 tgctgtcagc 1090 0.769762846331231 Inf 10 0 11 0 tggatgctgg 1091 0.769762846331231 Inf 10 0 11 0 tggcagtgtt 1092 0.769762846331231 Inf 10 0 11 0 tgtaaataaa 1093 0.769762846331231 Inf 10 0 11 0 tgttaagatg 1094 0.769762846331231 Inf 10 0 11 0 NM_009560 refGene chr7 21289064 + 119616 graph_last 3 40 tgtttgtaca 1095 0.769762846331231 Inf 10 0 11 0 NM_133939 refGene chr6 18731224 + 110681 graph_last l 4 41 ttggtacact 1096 0.769762846331231 Inf 10 0 11 0 NM_007714 refGene chr11 50906857 + 19742 graph_last l 21 77 aaggttgact 1097 0.789658930255365 Inf 11 0 12 0 actttcctct 1098 0.789658930255365 Inf 11 0 12 0 NM_017368 refGene chr2 91634573 + 76800 graph_last l 18 65 agagagcctg 1099 0.789658930255365 Inf 11 0 12 0 NM_025279 refGene chr13 58182021 - 35372 graph_second 1 37 atgttagtta 1100 0.789658930255365 Inf 11 0 12 0 NM_133697 refGene chr5 64944338 + 103345 graph_last 0 62 attgattaat 1101 0.789658930255365 Inf 11 0 12 0 NM_013922 refGene chr11 50436366 - 19703 graph_last l 11 46 caaaagttta 1102 0.789658930255365 Inf 11 0 12 0 NM_175488 refGene chr10 95970030 - 14952 graph_last 27 87 cagcttgcaa 1103 0.789658930255365 Inf 11 0 12 0 NM_013525 refGene chr1 164605371 + 7804 graph_last l 31 97 cagtgactgc 1104 0.789658930255365 Inf 11 0 12 0 NM_011751 refGene chr11 79967473 + 22170 graph_last l 6 44 ccacggtaga 1105 0.789658930255365 Inf 11 0 12 0 NM_172522 refGene chr9 67089160 - 138600 graph_last l 31 89 ctatggcttc 1106 0.789658930255365 Inf 11 0 12 0 NM_022420 refGene chr7 111043611 + 124660 graph_last l 13 96 ctgagtttga 1107 0.789658930255365 Inf 11 0 12 0 NM_017402 refGene chr8 12540613 + 128028 graph_last l 9 25 ctgatagcac 1108 0.789658930255365 Inf 11 0 12 0 BB647300 all_est chr12 79131294 + 29599 graph_last l 4 31 ctggaaacag 1109 0.789658930255365 Inf 11 0 12 0 NM_026156 refGene chr8 3586476 + 127592 graph_last 2 35 ctgtgggggg 1110 0.789658930255365 Inf 11 0 12 0 cttgcaagtg 1111 0.789658930255365 2.5 30 12 33 4 cttgtcactc 1112 0.789658930255365 Inf 11 0 12 0 gaaaggaaac 1113 0.789658930255365 Inf 11 0 12 0 NM_027898 refGene chr7 25153876 - 120022 graph_last l 21 74 gaaccctggc 1114 0.789658930255365 Inf 11 0 12 0 gagaacacac 1115 0.789658930255365 Inf 11 0 12 0 gcaaaaaaaa 1116 0.789658930255365 Inf 11 0 12 0 ggagcactgg 1117 0.789658930255365 Inf 11 0 12 0 ggctttggtc 1118 0.789658930255365 Inf 11 0 12 0 NM_175366 refGene chr7_random 13763294 + 126800 graph_last 0 26 gtcaaatact 1119 0.789658930255365 Inf 11 0 12 0 NM_025902 refGene chr3 139272492 - 89575 graph_last l 27 76 taagagctat 1120 0.789658930255365 Inf 11 0 12 0 taatccgtac 1121 0.789658930255365 Inf 11 0 12 0 genomic chr13 87774243 - 0 unique_long l 4 26 tatagtgtaa 1122 0.789658930255365 Inf 11 0 12 0 NM_182650 refGene chr6 51936949 + 112726 graph_last l 5 29 tcacctgaaa 1123 0.789658930255365 Inf 11 0 12 0 NM_133872 refGene chr4 135330172 - 98179 graph_last l 17 49 tcatcagcta 1124 0.789658930255365 Inf 11 0 12 0 tccctgactt 1125 0.789658930255365 Inf 11 0 12 0 NM_021535 refGene chr4 40784770 - 92391 graph_last l 12 70 tctgcgtcct 1126 0.789658930255365 Inf 11 0 12 0 NM_138657 refGene chr11 96982105 + 23518 graph_last 38 90 tctttttggg 1127 0.789658930255365 Inf 11 0 12 0 NM_008244 refGene chr11 120036784 + 25564 graph_last l 23 74 tggctcctgc 1128 0.789658930255365 Inf 11 0 12 0 NM_145522 refGene chr2 35049371 + 73654 graph_last l 138 371 tggtgtagga 1129 0.789658930255365 2.5 30 12 33 4 tgttcaatca 1130 0.789658930255365 Inf 11 0 12 0 tgtttggagc 1131 0.789658930255365 Inf 11 0 12 0 genomic chr14 58532810 + 0 unique_long l 5 31 ttagaccttt 1132 0.789658930255365 Inf 11 0 12 0 aaaaagggtt 1133 0.79064080009837 0.222222222222222 2 9 2 3 NM_010808 refGene chr2 156443008 + 80684 graph_last l 5 21 aaactcctgt 1134 0.79064080009837 0.222222222222222 2 9 2 3 aaatgtgaat 1135 0.79064080009837 0.222222222222222 2 9 2 3 aacaagtcat 1136 0.79064080009837 0.222222222222222 2 9 2 3 NM_009125 refGene chr5 120507994 - 106649 graph_last l 24 64 aacacatcag 1137 0.79064080009837 0.222222222222222 2 9 2 3 NM_009003 refGene chr8 125631605 + 134301 graph_last l 8 35 aacgtgagcg 1138 0.79064080009837 0.222222222222222 2 9 2 3 NM_144516 refGene chr13 9920954 - 32574 graph_last l 25 73 aacgtgaggt 1139 0.79064080009837 0.222222222222222 2 9 2 3 BI080296 all_est chr4 44395266 - 92807 graph_last l 9 49 aactccaccc 1140 0.79064080009837 0.222222222222222 2 9 2 3 NM_007566 refGene chr17 75280524 - 61202 graph_last l 3 29 aagatatggc 1141 0.79064080009837 0.222222222222222 2 9 2 3 NM_026165 refGene chr18_random 1519575 + 66799 graph_last l 17 28 aagtaaggtg 1142 0.79064080009837 0.222222222222222 2 9 2 3 NM_025794 refGene chr3 81428166 - 86145 graph_last l 9 45 aagtatttgt 1143 0.79064080009837 0.222222222222222 2 9 2 3 aatgagaagg 1144 0.79064080009837 0.222222222222222 2 9 2 3 NM_026887 refGene chrX 151955962 + 152652 graph_last 3 23 aatgttcctt 1145 0.79064080009837 0.222222222222222 2 9 2 3 AF133818 knownGene chr3 161696867 + 90649 graph_last 0 50 aatttaagtg 1146 0.79064080009837 0.222222222222222 2 9 2 3 acatttctgt 1147 0.79064080009837 0.222222222222222 2 9 2 3 NM_025789 refGene chr17 7422402 + 56847 graph_last 7 49 acccatccag 1148 0.79064080009837 0.222222222222222 2 9 2 3 NM_030245 refGene chr1 169990731 - 8174 graph_last l 7 32 accgtgactc 1149 0.79064080009837 0.222222222222222 2 9 2 3 NM_008165 refGene chr11 56927756 + 20133 graph_last l 35 102 actccgggga 1150 0.79064080009837 0.222222222222222 2 9 2 3 NM_011112 refGene chr12 101396152 + 30934 graph_last 24 79 actggagttt 1151 0.79064080009837 4.66666666666667 14 3 16 1 agagtgagga 1152 0.79064080009837 0.222222222222222 2 9 2 3 NM_019442 refGene chr17 34484621 - 58888 graph_last 9 28 aggagccaat 1153 0.79064080009837 0.222222222222222 2 9 2 3 aggcagacag 1154 0.79064080009837 0.838624338624339 317 378 351 131 NM_133831 refGene chr7 12959477 + 118963 graph_last l 20 94 aggcaggccg 1155 0.79064080009837 0.222222222222222 2 9 2 3 NM_008144 refGene chr19 9176105 - 67907 graph_last l 4 29 agggaatctg 1156 0.79064080009837 0.222222222222222 2 9 2 3 NM_026498 refGene chr7 71266031 - 122278 graph_last l 23 63 agggagtggg 1157 0.79064080009837 0.222222222222222 2 9 2 3 NM_010760 refGene chr4 106740667 + 95882 graph_last 5 22 atcaggaaag 1158 0.79064080009837 0.222222222222222 2 9 2 3 BC046438 knownGene chr13 71509181 + 36073 graph_last l 9 20 atgatgtgca 1159 0.79064080009837 0.222222222222222 2 9 2 3 NM_009408 refGene chr2 161336122 + 81031 graph_last 4 28 atgggaaaat 1160 0.79064080009837 0.222222222222222 2 9 2 3 NM_027016 refGene chr3 31714208 + 83982 graph_last l 55 162 atgggtcatc 1161 0.79064080009837 0.222222222222222 2 9 2 3 AU256308 all_est chr4 53386347 + 93312 graph_last l 4 17 atgtattcag 1162 0.79064080009837 0.222222222222222 2 9 2 3 NM_029402 refGene chr18 3435862 + 62399 graph_last l 29 108 atgttgctgc 1163 0.79064080009837 4.66666666666667 14 3 16 1 caaatgaggc 1164 0.79064080009837 0.222222222222222 2 9 2 3 cagacagaac 1165 0.79064080009837 0.222222222222222 2 9 2 3 NM_178597 refGene chr14 15621704 - 39454 graph_last l 61 164 cagccctccc 1166 0.79064080009837 0.222222222222222 2 9 2 3 cagctttgct 1167 0.79064080009837 0.222222222222222 2 9 2 3 NM_198420 refGene chr15 78244879 + 48182 graph_last l 4 23 cagtgcactg 1168 0.79064080009837 0.222222222222222 2 9 2 3 NM_053078 refGene chr18 33627012 + 63718 graph_last l 3 36 catcattggt 1169 0.79064080009837 3.33333333333333 20 6 22 2 NM_177581 refGene chr5_random 18880823 + 109360 graph_last l 3 10 cattaacctt 1170 0.79064080009837 0.222222222222222 2 9 2 3 NM_028967 refGene chr19 6179959 - 67652 graph_last l 47 89 ccaaaaggaa 1171 0.79064080009837 0.222222222222222 2 9 2 3 NM_021551 refGene chr14 45995580 - 41332 graph_last l 184 393 ccaaccgtct 1172 0.79064080009837 0.5 13 26 14 9 NM_145130 refGene chr6 126639248 + 116885 graph_last l 14 119 ccaggaattc 1173 0.79064080009837 4.66666666666667 14 3 16 1 cccaaagagt 1174 0.79064080009837 0.222222222222222 2 9 2 3 NM_023556 refGene chr5 113388856 + 106093 graph_last 2 48 ccgactgcct 1175 0.79064080009837 0.222222222222222 2 9 2 3 genomic chr7 52539336 + 0 unique_long l 4 15 ccgcttggac 1176 0.79064080009837 0.222222222222222 2 9 2 3 NM_054050 refGene chr2 30009257 + 73157 graph_last l 10 53 cctcccagtg 1177 0.79064080009837 0.222222222222222 2 9 2 3 NM_016909 refGene chr8 126836338 + 134395 graph_last l 47 96 cctggtaagt 1178 0.79064080009837 0.222222222222222 2 9 2 3 NM_009846 refGene chr10 45183534 - 12083 graph_last 0 32 cgaacaaaag 1179 0.79064080009837 4.66666666666667 14 3 16 1 NM_027985 refGene chr4 146258705 + 99141 graph_last l 10 31 cgttattgtt 1180 0.79064080009837 0.222222222222222 2 9 2 3 NM_026139 refGene chrX 123295619 - 151475 graph_last l 29 56 ctaaagaaac 1181 0.79064080009837 0.222222222222222 2 9 2 3 NM_026993 refGene chr3 149812435 + 90163 graph_last l 12 40 ctactctcta 1182 0.79064080009837 0.222222222222222 2 9 2 3 NM_011791 refGene chr8 24662200 - 128728 graph_last 0 14 ctcagacagc 1183 0.79064080009837 0.222222222222222 2 9 2 3 NM_023465 refGene chr4 147679039 + 99296 graph_last l 7 34 ctcgctttgg 1184 0.79064080009837 0.222222222222222 2 9 2 3 ctgcatcgtt 1185 0.79064080009837 0.591836734693878 29 49 32 17 ctgctttcca 1186 0.79064080009837 0.222222222222222 2 9 2 3 ctgtggaaga 1187 0.79064080009837 0.222222222222222 2 9 2 3 cttcccactg 1188 0.79064080009837 0.222222222222222 2 9 2 3 NM_007575 refGene chr16 10024134 - 51425 graph_last l 16 44 cttccctggc 1189 0.79064080009837 0.222222222222222 2 9 2 3 cttcttgtgt 1190 0.79064080009837 0.222222222222222 2 9 2 3 NM_007727 refGene chr15 94185949 + 49433 graph_last l 34 87 ctttaagatg 1191 0.79064080009837 0.222222222222222 2 9 2 3 genomic chr1 58317986 + 0 unique_long l 4 32 gaaaaaggaa 1192 0.79064080009837 4.66666666666667 14 3 16 1 NM_172768 refGene chr9 41413125 - 136743 graph_last l 39 128 gaagtccagt 1193 0.79064080009837 3.33333333333333 20 6 22 2 gaattggaag 1194 0.79064080009837 0.222222222222222 2 9 2 3 NM_008721 refGene chr2 25675901 + 72840 graph_last l 142 341 gatagagagt 1195 0.79064080009837 1.79310344827586 52 29 58 10 NM_024186 refGene chr13 89912980 + 36756 graph_last 37 105 gataggaata 1196 0.79064080009837 2.77777777777778 25 9 28 3 NM_025300 refGene chr1 4783222 - 85 graph_last l 14 112 gattcttgtg 1197 0.79064080009837 4.66666666666667 14 3 16 1 NM_008947 refGene chr12 95680893 + 30593 graph_last 42 121 gcaaaggatg 1198 0.79064080009837 4.66666666666667 14 3 16 1 gcaactgggc 1199 0.79064080009837 0.222222222222222 2 9 2 3 gcacacacct 1200 0.79064080009837 0.222222222222222 2 9 2 3 gcagagtttt 1201 0.79064080009837 4.66666666666667 14 3 16 1 NM_009010 refGene chr8 85693946 + 131851 graph_last l 10 59 gccaagatgc 1202 0.79064080009837 0.222222222222222 2 9 2 3 gcccaggctc 1203 0.79064080009837 4.66666666666667 14 3 16 1 gccgactaaa 1204 0.79064080009837 0.222222222222222 2 9 2 3 gcctctgcct 1205 0.79064080009837 0.222222222222222 2 9 2 3 gcggcgccgc 1206 0.79064080009837 0.222222222222222 2 9 2 3 gcgtaaaaga 1207 0.79064080009837 0.222222222222222 2 9 2 3 genomic chr1 81489580 - 0 unique_long l 4 20 gctaacaagg 1208 0.79064080009837 0.222222222222222 2 9 2 3 gctaaccacc 1209 0.79064080009837 0.222222222222222 2 9 2 3 NM_011655 refGene chr17 35505345 + 58992 graph_last 0 17 gctacggttt 1210 0.79064080009837 0.222222222222222 2 9 2 3 gctcctcccc 1211 0.79064080009837 0.222222222222222 2 9 2 3 gctgggcggg 1212 0.79064080009837 0.222222222222222 2 9 2 3 NM_011666 refGene chr6 98839950 - 115335 graph_last 30 83 gctgttcaaa 1213 0.79064080009837 4.66666666666667 14 3 16 1 ggatggcaat 1214 0.79064080009837 4.66666666666667 14 3 16 1 NM_133697 refGene chr5 65008285 + 103345 graph_last l 27 57 ggatgtagag 1215 0.79064080009837 0.222222222222222 2 9 2 3 NM_007457 refGene chr5 135850695 - 107860 graph_last l 146 397 ggccaagtgg 1216 0.79064080009837 2.77777777777778 25 9 28 3 NM_031161 refGene chr9 123874771 - 142246 graph_last l 216 431 ggctggatgg 1217 0.79064080009837 0.222222222222222 2 9 2 3 ggctggttga 1218 0.79064080009837 0.222222222222222 2 9 2 3 gggcctgctc 1219 0.79064080009837 0.222222222222222 2 9 2 3 NM_178675 refGene chr10 55088948 + 12397 graph_last l 13 43 ggtaggagtc 1220 0.79064080009837 0.222222222222222 2 9 2 3 NM_030225 refGene chr12 81127815 + 29823 graph_last l 26 69 gtaaaatgct 1221 0.79064080009837 0.222222222222222 2 9 2 3 NM_183180 refGene chr2 93817607 + 77024 graph_last l 24 68 gtcactattt 1222 0.79064080009837 3.33333333333333 20 6 22 2 NM_028166 refGene chr7_random 785131 - 126432 graph_second 0 87 gtgacaactg 1223 0.79064080009837 3.33333333333333 20 6 22 2 taaatgtcct 1224 0.79064080009837 4.66666666666667 14 3 16 1 taataaataa 1225 0.79064080009837 2.17647058823529 37 17 41 6 NM_008666 refGene chr12 24561293 + 26811 graph_last l 15 29 taatgtttat 1226 0.79064080009837 0.222222222222222 2 9 2 3 NM_019406 refGene chr2 31298595 - 73309 graph_last l 58 96 taattaaatg 1227 0.79064080009837 0.222222222222222 2 9 2 3 NM_172674 refGene chr2 156913705 + 80749 graph_last l 10 36 tacagactcg 1228 0.79064080009837 0.222222222222222 2 9 2 3 NM_019434 refGene chr10 78647167 + 13750 graph_last l 17 38 tagctgtctg 1229 0.79064080009837 0.222222222222222 2 9 2 3 NM_019658 refGene chr19 53788622 - 70518 graph_second l 12 28 tagttccttc 1230 0.79064080009837 0.222222222222222 2 9 2 3 NM_148938 refGene chr15 9001386 - 45224 graph_last l 46 100 tatagaaagg 1231 0.79064080009837 0.222222222222222 2 9 2 3 NM_010817 refGene chr8 109113003 - 133214 graph_last l 31 117 tattgtttac 1232 0.79064080009837 4.66666666666667 14 3 16 1 tcactgtact 1233 0.79064080009837 0.222222222222222 2 9 2 3 NM_153152 refGene chr17 56592523 - 60255 graph_last l 61 136 tcagccttgt 1234 0.79064080009837 0.222222222222222 2 9 2 3 tcattaacag 1235 0.79064080009837 0.222222222222222 2 9 2 3 tccagaggcc 1236 0.79064080009837 0.222222222222222 2 9 2 3 NM_009149 refGene chr8 112789992 - 133441 graph_last l 34 122 tcctcggtgt 1237 0.79064080009837 0.222222222222222 2 9 2 3 tctaccatcc 1238 0.79064080009837 0.222222222222222 2 9 2 3 tctatttaca 1239 0.79064080009837 0.222222222222222 2 9 2 3 NM_028475 refGene chr3 92414398 - 86875 graph_last l 4 13 tctgtcccat 1240 0.79064080009837 0.222222222222222 2 9 2 3 AK049571 all_mrna chr17 84592004 - 61688 graph_second 0 33 tctgtttgtc 1241 0.79064080009837 0.222222222222222 2 9 2 3 NM_198610 refGene chr4 138900938 - 98461 graph_last l 29 73 tcttggcttc 1242 0.79064080009837 0.222222222222222 2 9 2 3 NM_007460 refGene chr10 83072244 - 14123 graph_last l 24 108 tgaagagaga 1243 0.79064080009837 3.33333333333333 20 6 22 2 NM_024191 refGene chr8 95957660 + 132516 graph_last l 79 199 tgaccattag 1244 0.79064080009837 2.66666666666667 24 9 27 3 NM_146085 refGene chr18 36784870 - 64008 graph_last l 10 32 tgactgaggt 1245 0.79064080009837 0.222222222222222 2 9 2 3 NM_025349 refGene chr10 83218070 - 14139 graph_last l 3 84 tgagcatctc 1246 0.79064080009837 3.33333333333333 20 6 22 2 tgattgttgg 1247 0.79064080009837 0.222222222222222 2 9 2 3 NM_153580 refGene chr7 118956363 + 125136 graph_last l 7 25 tgcaagcatc 1248 0.79064080009837 0.222222222222222 2 9 2 3 NM_030689 refGene chr15 81110420 - 48457 graph_last l 50 132 tgcagtgcac 1249 0.79064080009837 0.222222222222222 2 9 2 3 NM_011749 refGene chr16 33232157 + 53033 graph_last l 4 15 tgctacctag 1250 0.79064080009837 0.222222222222222 2 9 2 3 BE952224 all_est chr4 124070462 + 97121 graph_last l 9 21 tggataattt 1251 0.79064080009837 0.222222222222222 2 9 2 3 NM_145732 refGene chr6 77967413 - 114015 graph_last 26 44 tggattctta 1252 0.79064080009837 0.222222222222222 2 9 2 3 NM_018774 refGene chr4 127665884 + 97362 graph_last l 13 55 tggccaagcc 1253 0.79064080009837 0.222222222222222 2 9 2 3 tgggtagagg 1254 0.79064080009837 0.222222222222222 2 9 2 3 NM_025673 refGene chr15 12386785 + 45378 graph_last l 15 49 ttaatagtgg 1255 0.79064080009837 0.222222222222222 2 9 2 3 AK029707 knownGene chrX 125528359 - 151570 graph_last 23 61 ttaggcagct 1256 0.79064080009837 0.222222222222222 2 9 2 3 NM_029626 refGene chr14 25551429 - 40096 graph_last 10 39 ttataaattc 1257 0.79064080009837 0.222222222222222 2 9 2 3 ttatctgtgt 1258 0.79064080009837 0.222222222222222 2 9 2 3 ttatgggaat 1259 0.79064080009837 0.222222222222222 2 9 2 3 ttattaaaat 1260 0.79064080009837 2.66666666666667 24 9 27 3 ttcactcagt 1261 0.79064080009837 0.222222222222222 2 9 2 3 ttctaagaag 1262 0.79064080009837 0.222222222222222 2 9 2 3 NM_020050 refGene chr7 101779623 - 124151 graph_last l 61 95 ttctagaaca 1263 0.79064080009837 0.222222222222222 2 9 2 3 NM_173780 refGene chrX 141691790 + 152251 graph_last 1 7 ttctgtctga 1264 0.79064080009837 0.222222222222222 2 9 2 3 AK013739 knownGene chr1 39488467 - 1712 graph_last l 16 48 ttgaaaccct 1265 0.79064080009837 0.222222222222222 2 9 2 3 CK339473 all_est chr1 53427865 - 2273 graph_last l 33 64 ttgctttgaa 1266 0.79064080009837 0.222222222222222 2 9 2 3 NM_010629 refGene chr1 167340132 + 7952 graph_last l 42 126 ttgggagaac 1267 0.79064080009837 0.222222222222222 2 9 2 3 NM_011424 refGene chr5 123786381 - 107019 graph_last l 37 97 ttgttccaat 1268 0.79064080009837 0.222222222222222 2 9 2 3 NM_172827 refGene chr17 17012571 - 57456 graph_last l 19 38 tttaactata 1269 0.79064080009837 0.222222222222222 2 9 2 3 NM_009169 refGene chr6 6285073 - 110133 graph_last 73 165 tttatttcat 1270 0.79064080009837 2.66666666666667 24 9 27 3 NM_009156 refGene chr7 12912230 - 118959 graph_last l 721 1811 tttccaggtg 1271 0.79064080009837 1.38461538461538 144 104 159 36 NM_026661 refGene chr2 157193613 + 80777 graph_last l 7 25 tttctggtgt 1272 0.79064080009837 0.222222222222222 2 9 2 3 tttgctacaa 1273 0.79064080009837 2.23529411764706 38 17 42 6 NM_016759 refGene chr11 102067093 - 24069 graph_last l 37 69 tttgttatag 1274 0.79064080009837 0.222222222222222 2 9 2 3 NM_016891 refGene chr17 20487724 + 57555 graph_last l 94 407 ttttttgtgt 1275 0.79064080009837 0.666666666666667 50 75 55 26 NM_021608 refGene chr7 114227348 + 124860 graph_last 23 101 agaccctgct 1276 0.79415164269608 5 15 3 17 1 NM_010911 refGene chr2 156770802 + 80726 graph_last 24 122 gccattggaa 1277 0.79415164269608 5 15 3 17 1 tatgctgtaa 1278 0.79415164269608 5 15 3 17 1 NM_146087 refGene chr18 61709666 + 65292 graph_last l 35 105 tatgtgtgtt 1279 0.79415164269608 5 15 3 17 1 tgtgttgtgt 1280 0.79415164269608 1.45833333333333 105 72 116 25 NM_019549 refGene chr11 17098989 + 17866 graph_last l 655 903 ttgtgaaatc 1281 0.79415164269608 5 15 3 17 1 BC051169 knownGene chr15 28595290 - 45887 graph_last l 15 58 tttacacagt 1282 0.79415164269608 5 15 3 17 1 NM_009898 refGene chr7_random 46673618 + 127457 graph_last 17 51 acagtgccta 1283 0.799261671611536 0.352941176470588 6 17 7 6 ctgtagactg 1284 0.799261671611536 0.352941176470588 6 17 7 6 NM_013648 refGene chr7 16154535 - 119265 graph_last l 31 134 gggcccaggc 1285 0.799261671611536 0.352941176470588 6 17 7 6 NM_027439 refGene chrX 11164881 + 147275 graph_last l 143 350 tgcaaatgga 1286 0.799261671611536 0.352941176470588 6 17 7 6 tgggtgtccc 1287 0.799261671611536 0.352941176470588 6 17 7 6 ttacagaaat 1288 0.799261671611536 0.352941176470588 6 17 7 6 NM_025942 refGene chr2 73487585 - 75725 graph_last l 38 80 ttttacagta 1289 0.799261671611536 0.352941176470588 6 17 7 6 tcctgtgtca 1290 0.81031230362116 0.482758620689655 14 29 15 10 ttggtgaagg 1291 0.811349242601992 0.838068181818182 295 352 326 122 AK044502 knownGene chr6 144698590 + 117947 graph_last l 34 96 aacttgcaat 1292 0.811443695189957 0.333333333333333 4 12 4 4 NM_013635 refGene chr12 27668053 + 26961 graph_last l 32 64 acaaagtgtc 1293 0.811443695189957 0.333333333333333 4 12 4 4 NM_172606 refGene chr15 32066308 + 46028 graph_last l 31 70 acaatcctat 1294 0.811443695189957 0.333333333333333 4 12 4 4 NM_023672 refGene chr4 105908056 + 95788 graph_last l 21 82 acactttttg 1295 0.811443695189957 0.333333333333333 4 12 4 4 NM_009441 refGene chr16 96139035 - 56249 graph_last 10 50 acagttgatt 1296 0.811443695189957 0.333333333333333 4 12 4 4 agagacacca 1297 0.811443695189957 0.333333333333333 4 12 4 4 NM_029478 refGene chr11 86255209 - 22689 graph_last b 31 157 attccacgcg 1298 0.811443695189957 0.333333333333333 4 12 4 4 NM_026211 refGene chr13 55372901 + 35178 graph_last l 17 61 caaacgacta 1299 0.811443695189957 0.333333333333333 4 12 4 4 NM_026122 refGene chr9 85866120 - 139919 graph_last l 21 50 caatttttct 1300 0.811443695189957 0.333333333333333 4 12 4 4 cagaccctac 1301 0.811443695189957 0.333333333333333 4 12 4 4 NM_139237 refGene chr4 41162047 - 92438 graph_last l 27 75 cataccagta 1302 0.811443695189957 0.333333333333333 4 12 4 4 catagtttaa 1303 0.811443695189957 0.333333333333333 4 12 4 4 NM_025333 refGene chr19 10470483 + 68003 graph_last 23 65 gcaccctgcc 1304 0.811443695189957 0.333333333333333 4 12 4 4 NM_025617 refGene chr4 106060545 - 95810 graph_last l 11 59 gcaggggcgg 1305 0.811443695189957 0.333333333333333 4 12 4 4 NM_172994 refGene chr5 35322766 + 102036 graph_last l 101 228 gccctagttt 1306 0.811443695189957 0.333333333333333 4 12 4 4 NM_025388 refGene chr1 174972698 - 8448 graph_last 53 122 gccctggggc 1307 0.811443695189957 0.333333333333333 4 12 4 4 S76838 knownGene chr8 13715271 + 128080 graph_last l 21 76 ggaggccacc 1308 0.811443695189957 0.333333333333333 4 12 4 4 ggtgagcctg 1309 0.811443695189957 0.333333333333333 4 12 4 4 gtggcacacg 1310 0.811443695189957 0.333333333333333 4 12 4 4 gtgggcgtgt 1311 0.811443695189957 0.666666666666667 52 78 58 27 NM_175212 refGene chr15 59927760 + 47233 graph_last l 39 85 taaactgggt 1312 0.811443695189957 0.333333333333333 4 12 4 4 NM_030132 refGene chr15 52978919 - 46892 graph_last 1 28 tagtttgtaa 1313 0.811443695189957 0.333333333333333 4 12 4 4 tcgagcagtt 1314 0.811443695189957 0.333333333333333 4 12 4 4 NM_008252 refGene chr8 57226066 + 130275 graph_last 5 83 tctgcaaagg 1315 0.811443695189957 0.333333333333333 4 12 4 4 tctttctttt 1316 0.811443695189957 0.333333333333333 4 12 4 4 tgacaatttt 1317 0.811443695189957 2.28571428571429 32 14 35 5 tgggtgctgg 1318 0.811443695189957 0.333333333333333 4 12 4 4 NM_146200 refGene chr7 118690565 - 125113 graph_last l 7 25 ttacaacaag 1319 0.811443695189957 0.333333333333333 4 12 4 4 NM_019803 refGene chr10 79742581 + 13828 graph_last 17 57 ttgtgtaaga 1320 0.811443695189957 0.333333333333333 4 12 4 4 accttttctt 1321 0.822639414857319 0.434782608695652 10 23 11 8 NM_025740 refGene chr11 29119939 - 18514 graph_last l 19 106 atgagtctgt 1322 0.822639414857319 0.434782608695652 10 23 11 8 cctttgtgac 1323 0.822639414857319 0.434782608695652 10 23 11 8 gagtgattat 1324 0.822639414857319 0.434782608695652 10 23 11 8 NM_007874 refGene chr18 34560614 - 63762 graph_last l 64 151 gcttaagtgt 1325 0.822639414857319 0.434782608695652 10 23 11 8 agatctatac 1326 0.823192802851021 1.80769230769231 47 26 52 9 tcaataaagc 1327 0.82319917865893 0.652173913043478 45 69 50 24 NM_009559 refGene chr17 36762321 + 59102 graph_last l 4 106 cacgacaccc 1328 0.835530682624395 2.05 41 20 45 7 aaaaaataaa 1329 0.849408386274404 Inf 8 0 9 0 aaaagatact 1330 0.849408386274404 4.33333333333333 13 3 14 1 aaaggacaca 1331 0.849408386274404 0.166666666666667 1 6 1 2 aaattggagg 1332 0.849408386274404 0.411764705882353 7 17 8 6 NM_009212 refGene chr19 3092972 + 67273 graph_last 3 20 aaatttagga 1333 0.849408386274404 0.166666666666667 1 6 1 2 NM_028325 refGene chrX 27525223 + 147861 graph_last l 21 48 aacaaatcca 1334 0.849408386274404 0.166666666666667 1 6 1 2 BC046438 knownGene chr13 71509423 + 36073 graph_last l 7 45 aacacaggtc 1335 0.849408386274404 Inf 8 0 9 0 NM_024231 refGene chr19 6126529 - 67639 graph_last l 4 23 aaccctcaca 1336 0.849408386274404 0.166666666666667 1 6 1 2 aactgacatt 1337 0.849408386274404 0.166666666666667 1 6 1 2 NM_011914 refGene chr5 32380481 + 101823 graph_last l 3 13 aactgtgata 1338 0.849408386274404 0.166666666666667 1 6 1 2 NM_025844 refGene chr9 18477078 + 135458 graph_last 3 50 aacttttgtt 1339 0.849408386274404 Inf 9 0 10 0 NM_025543 refGene chr2 153430747 + 80394 graph_last l 9 22 aagacaatac 1340 0.849408386274404 Inf 9 0 10 0 aagagtcctt 1341 0.849408386274404 0.166666666666667 1 6 1 2 NM_175642 refGene chr1 25407750 - 1031 graph_last l 9 25 aagcacaatg 1342 0.849408386274404 0.166666666666667 1 6 1 2 aagcagcagc 1343 0.849408386274404 0.411764705882353 7 17 8 6 NM_007597 refGene chr11 49920656 + 19666 graph_last 0 4 aagccagctc 1344 0.849408386274404 0.166666666666667 1 6 1 2 aagccaggct 1345 0.849408386274404 0.166666666666667 1 6 1 2 NM_025840 refGene chr12 30